Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0533
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    35   0.009
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    29   0.75 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    28   1.3  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    27   1.7  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   1.7  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   2.3  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    26   4.0  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   5.3  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   7.0  
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    25   9.3  
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    25   9.3  
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.3  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   9.3  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   9.3  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = -2

Query: 439 PSITSSPYLTRGFGFCSEPLSPASSSIGESALSAARFTTMVESVGSFVDPMIRTMLYKLH 260
           P   SS + +      S+P SP  S    S  S   F T++++  S +  M++  L    
Sbjct: 430 PKHASSSHKSSIMSVNSDPTSPKVSKFDTSD-STFPFDTLLQAFESEIRLMLKDYLISKE 488

Query: 259 QYIKNTINFIISPPIQFY 206
           +YI+N+ NF++   +  Y
Sbjct: 489 EYIENSGNFVVGTEMSIY 506


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 460 PASEDEEEANSFCTEG-PSKWRETFEALRCENSS 558
           P+     E  +FC    PS+WRE + A+ C N +
Sbjct: 161 PSPPSRNEQPAFCVNWCPSRWREQYIAVGCMNDA 194


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 269 VKHSSNHRVYKRAD-GFYHGRKTCCGQCGLTDTGG 370
           VK +  + +  + D  F   RK CC  CG+  T G
Sbjct: 791 VKRARQNNIKNKDDVNFSEDRKKCCALCGIVGTEG 825


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 375 GESGSEQKPKPLVKYGELVILGYNGYLPAGER 470
           G  G E+KP+ L+K  E + +  + +  AGER
Sbjct: 166 GSHGKERKPRRLLKLEEAMKITTDAFTSAGER 197


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 448 PLYPSITSSPYLTRGFGF---CSEPLSPASSSIGES 350
           PLYP+  SSP  TR   F    S+P +P  SS+ ++
Sbjct: 489 PLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQA 524


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 227 ITTNSILLKHTSLNICKLTSFHFITSDTQF*TPLFTVINASF 102
           +T +S L  H + NIC    FH I  DT +  P+F  +   +
Sbjct: 158 LTISSPLEAHKANNIC----FHLIGLDTGYANPIFAALEVDY 195


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 319 VESV-GSFVDPMIRTMLYKLHQYIKNTINFIISPPIQ 212
           VE V G  +   +R +++KLH    N    I SPP +
Sbjct: 45  VEGVDGEDISKWVRKVVFKLHDTYNNPTRTIESPPFE 81


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 233 YYITTNSILLKHTSLNICKLTSFHFI 156
           +++  + I+L H+  +I  L SFHF+
Sbjct: 157 FFLLYHQIILSHSLFHISHLISFHFL 182


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 239 NGVFYVLVKFVKHSSNHRVYKRADGFYHGRK 331
           NGV Y  VKFV   S   V K A G   G++
Sbjct: 68  NGVQYGFVKFVNAESIEEVLKDAKGMTLGQR 98


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 449 ISTSRRARTKKKPIRSVQKAQANGVRRSKHYVVKTP---HSSXAYSMPANT 592
           +S++ R  T+K    S  K  + GVR+SK      P   H+  +   PA T
Sbjct: 148 VSSTFRNATRKSKKPSASKDTSRGVRKSKAGAPSDPSSVHAPSSLEKPAGT 198


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 333 RAADSADSPILEEAGESGSEQKPKP 407
           R    A+S +LEEA +    Q+PKP
Sbjct: 232 RRVQPAESDVLEEALKKPKTQEPKP 256


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 239 NGVFYVLVKFVKHSSNHRVYK 301
           NG F  L K VK+   HR+Y+
Sbjct: 46  NGTFDCLKKIVKNEGPHRLYR 66


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 350 GLTDTGGGRREWLGTEA--KTSRQIWRTRDTRVQWISTSR 463
           G+ +T      WL   +  KTS  ++R +  ++QW+   R
Sbjct: 172 GVGNTNEDVENWLDAASMPKTSHDMYRLQKRKLQWVKEER 211


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 385 PLSPASSSIGESALSAARFTTMVESVGSFVDPMIRTMLY 269
           P++P S+ I   +   A +  ++ SV  +VD   R++LY
Sbjct: 658 PITPISAFIRGPSFVLAEWNALLASVIDYVDSGWRSLLY 696


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -2

Query: 391 SEPLSPASSSIGESALSAARFTTMVESVGSFVDPMIRTMLYKLHQYIKNTINFIISPPIQ 212
           SE  SP  S  G     +  +  +++++       +R +LY  ++++KN  N +IS   Q
Sbjct: 356 SELDSPGKS--GSFFYFSRDYRFIIKTIHHSEHKFLREILYDYYEHVKNNPNTLIS---Q 410

Query: 211 FY*NTHR 191
           FY   HR
Sbjct: 411 FY-GLHR 416


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 385 PLSPASSSIGESALSAARFTTMVESVGSF 299
           P+S A+ S+   A SA+ F T V + G+F
Sbjct: 373 PISYAAESVPRPATSASPFLTPVTTSGTF 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,919
Number of Sequences: 5004
Number of extensions: 57630
Number of successful extensions: 210
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)