Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0533
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 31 0.78
01_05_0391 + 21726499-21726554,21726921-21727158,21727275-21727328 31 1.0
10_08_0019 - 14167952-14171059 30 1.8
03_05_0063 - 20375038-20375257,20375338-20375426,20375542-203757... 30 1.8
01_01_0709 - 5489623-5490360 30 1.8
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 29 2.4
09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122... 29 2.4
11_01_0377 + 2877530-2878577,2878721-2878803 29 4.1
10_07_0072 + 12607920-12608229,12609205-12609420,12610216-126103... 29 4.1
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271 29 4.1
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 28 7.2
05_07_0325 - 29272613-29272849,29272903-29273025,29273084-29273149 28 7.2
07_03_0185 + 14828461-14828660,14829016-14829487 27 9.6
03_02_0907 - 12297523-12297891,12298051-12298200,12298356-122984... 27 9.6
01_06_1377 + 36764461-36765339 27 9.6
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 31.1 bits (67), Expect = 0.78
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +2
Query: 353 LTDTGGGRR--EWLGTEAKTSRQIWRTRDTRV-QWISTSRRARTKKKPIRSVQKAQANGV 523
L D G + EWL T +T ++R+ D Q R RTK KPIR + +
Sbjct: 86 LLDVDGDKNDYEWLLTPPETP--LFRSLDDEEEQSAGQDSRGRTKSKPIRISGSSTVDNT 143
Query: 524 RRSKHYVVKTPHSSXAYSMPANTPSRT-PSVAVRRSS 631
+RS ++ S S + SRT PS A RSS
Sbjct: 144 QRSS----RSSASPIRLSPSPRSMSRTRPSSAASRSS 176
>01_05_0391 + 21726499-21726554,21726921-21727158,21727275-21727328
Length = 115
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +2
Query: 242 GVFYVLVKFVKHSSNHRVYKRADGFYHGRKTCCGQCGLTDTGGGRREWLGTEAKTS 409
GV L +F RV +R G HGR LT T G+ EW GT+ +S
Sbjct: 30 GVLLSLSRF--RPKRQRVKQRGGG--HGRCGAASSRALTGTENGKGEWRGTKTTSS 81
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Frame = +2
Query: 344 QCGLTDTGGGRREWLGTEAKTSRQIWRTRDTRVQWISTSRRARTKKKPIR-SVQKAQANG 520
+C G GRR T TSR+ WR QW + R + +R V A A
Sbjct: 2 ECADYFIGSGRRCSPSTSTSTSREAWRPEK---QWRKATNVIRGCHRLLRLGVLSAAAGI 58
Query: 521 VRRSKHYVVKTPHSSXAYSMPANTPSRTP 607
+RR+ YV H + + P
Sbjct: 59 MRRNPSYVEIKVHDEGELDVSSGGDGEAP 87
>03_05_0063 -
20375038-20375257,20375338-20375426,20375542-20375730,
20377507-20378175,20379597-20379806
Length = 458
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 296 YKRADGFYHGRKTCCGQCGLTDTGGGRREWLGTEAKTSRQIW 421
Y+RA+ Y G CG +T GG RE L + + W
Sbjct: 353 YERAERVYKGGLDPCGAVHITIGDGGNREGLAHRYRNPKPAW 394
>01_01_0709 - 5489623-5490360
Length = 245
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 350 GLTDTGGGRREWLGTEAKTSRQIWRTRDTRVQWISTSRRAR 472
GLT GGG + +G +A+T ++ R R + + + SRR R
Sbjct: 25 GLTAAGGGVGDDVGDDAETGGRLGRLRGGQQRLVPRSRRRR 65
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 466 SPAGRYPLYPSITSSPYLTRGFGFCSEPLSPASSSIGESALSAA 335
+PA YP YPS SP ++ F P P+ S S S A
Sbjct: 103 APAAAYPSYPSPNPSPSISPSSSFHHHPEPPSPSPSAPSYPSIA 146
>09_01_0086 -
1225132-1225299,1225530-1225679,1227629-1228006,
1229103-1229150
Length = 247
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 521 VRRSKHYVVK--TPHSSXAYSMPANTPSRTPSVAVRRSSGI 637
++RS+H+ K TPH + + N PS T S++ ++ +GI
Sbjct: 157 IKRSEHHRPKAGTPHCTSCHCWLHNAPSLTCSLSCKKKAGI 197
>11_01_0377 + 2877530-2878577,2878721-2878803
Length = 376
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +3
Query: 273 SIVRIIGSTNEPTDSTMVVKRAADSADSPI-----LEEAGESGSEQKPKPLVKY 419
++ ++ TN P + + V+ +A + +++ SG E+KPKP+V Y
Sbjct: 2 TVTTVVEETNNPAATAVKVEEKTAAATTTTTTTTQVDKKTTSGEEEKPKPVVTY 55
>10_07_0072 +
12607920-12608229,12609205-12609420,12610216-12610367,
12611554-12611833,12612037-12612239
Length = 386
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 472 PRSPAGRYP-LYPSITSSPYLTRGFGFCSEPLSPASSSIGESALSAARFTTMVESVGSFV 296
P + A RY LY + ++ + +GF S PL+ S GE A FT + GS V
Sbjct: 295 PGATAVRYADLYGPVAAAVASPKEYGFGSSPLAACCGSGGEPYNFNANFTGFCATPGSTV 354
>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
Length = 450
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 374 RREWLGTEAKTSRQIWRTRDTRVQW-ISTSRRARTKKKPIRSVQKAQ 511
+ EW EAK + + ++T V+W +R + K R + ++Q
Sbjct: 86 KEEWAEMEAKEKEEAPKVKETMVEWEARVKKRIEEENKAYREMMRSQ 132
>11_04_0474 +
18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 324 VVKRAADSADSPILEEAGESGSEQKPKPLVKYGELV 431
+V RAAD+AD +E ++ E+K + ++ GE V
Sbjct: 211 LVPRAADAADEDEVEHVVDTSDEEKEEGEIEEGEAV 246
>05_07_0325 - 29272613-29272849,29272903-29273025,29273084-29273149
Length = 141
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 308 DGFYHGRKTCCGQCGLTDTGGGRREWLGTEAKTSRQIWRTRDTR 439
DGF R+ CG GGG + W G E +W+ +D R
Sbjct: 37 DGFK--RRAVCGGSSSAAGGGGWKVWRGEE---QHDLWQIKDRR 75
>07_03_0185 + 14828461-14828660,14829016-14829487
Length = 223
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 291 GSTNEPTDSTMVVKRAADSADSPILEEAGESGSEQKPKPLVKYGELVILGYNGYLPAGER 470
G N D+ +A S P E G +G + P + +V+ NGY P G R
Sbjct: 67 GLDNNEKDANQGTVKALGS--HPTCEVYGSTGHSRMDCPETREDVMVMNNKNGYRPQGGR 124
Query: 471 G 473
G
Sbjct: 125 G 125
>03_02_0907 -
12297523-12297891,12298051-12298200,12298356-12298463,
12298693-12298815,12299039-12299312,12304895-12304973,
12305222-12305256,12305372-12305429,12306185-12307274
Length = 761
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +1
Query: 439 GTMDIYQPASEDEEEANS 492
G +D+++PA+ DEE+AN+
Sbjct: 688 GGLDMFEPATTDEEDANA 705
>01_06_1377 + 36764461-36765339
Length = 292
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -2
Query: 484 LLLRPRSPAGRYPLYPSITSSPY 416
L LR RSP P YP +SSPY
Sbjct: 148 LALRERSPPPPEPQYPPPSSSPY 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,930,421
Number of Sequences: 37544
Number of extensions: 349855
Number of successful extensions: 1212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -