Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0533
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53930.1 68418.m06710 expressed protein                             36   0.030
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P...    29   2.6  
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P...    29   2.6  
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family...    29   3.5  
At2g40070.1 68415.m04923 expressed protein                             29   3.5  
At3g42550.1 68416.m04414 aspartyl protease family protein weak s...    28   6.1  
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai...    27   8.0  
At3g52525.1 68416.m05776 ovate protein, putative 83% similar to ...    27   8.0  
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    27   8.0  

>At5g53930.1 68418.m06710 expressed protein
          Length = 529

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 294 STNEPTDSTMVVKRAADSADSPILEEAGESGSEQKPKPLVKYGELVILGYNGYLP--AGE 467
           S++  T+    VK  + S    I E   ES  EQK   +++ GE+V + Y  Y+P  A  
Sbjct: 462 SSHADTEEVDEVKGGSQSEQKTIDETKDESQYEQKTMTVMRGGEMVQVSYKVYIPKKASS 521

Query: 468 RGRRR 482
            GRR+
Sbjct: 522 LGRRK 526


>At5g16070.1 68418.m01878 chaperonin, putative similar to
           SWISS-PROT:P80317 T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  ILCNFVLFIENREIRNTFFYCNRKIKEALMT 120
           + CN  L  E  EI   FFY N + +EA++T
Sbjct: 234 LTCNVSLEYEKSEINAGFFYSNAEQREAMVT 264


>At3g02530.1 68416.m00241 chaperonin, putative similar to
           SWISS-PROT:P80317- T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  ILCNFVLFIENREIRNTFFYCNRKIKEALMT 120
           + CN  L  E  EI   FFY N + +EA++T
Sbjct: 234 LTCNVSLEYEKSEINAGFFYSNAEQREAMVT 264


>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
           protein
          Length = 513

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 484 LLLRPRSPAGRYPLYPSI-TSSPYLTRGFGFCSEPLSPASSSIGESALSAA 335
           L+    +P G  P   S+ TS+P    GF F + P S  SSS+  +  S A
Sbjct: 390 LIASSATPGGSNPPQTSVPTSNPSSGAGFSFLNTPASGPSSSLFATPSSTA 440


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 466 SPA-GRYPLYPSITSSPYLTRGFGFCSEPLSP 374
           SP+ GR P+Y S +S P + RG+   S+ +SP
Sbjct: 429 SPSRGRAPMYSSGSSVPAVNRGYSKASDNVSP 460


>At3g42550.1 68416.m04414 aspartyl protease family protein weak
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 356

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -2

Query: 472 PRSPAGRYPLYPSITSSPYLTRGFGFCSEPLSPASSSIGES-ALSAARFTTMVESVGSFV 296
           P S     PLY +   S  +T        P+ P+  S+ +         TT+V   G   
Sbjct: 214 PCSTVSSQPLYYNPQFSHMMTVAVNDLRLPIDPSVFSVAKGYGTIIDSGTTLVHFPGEAY 273

Query: 295 DPMIRTMLYKLHQY 254
           DP+I+ +L  + QY
Sbjct: 274 DPLIQAILNVVSQY 287


>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 442

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 234 KLMVFFMYW*SL*SIVRIIGSTNEPTDSTMVVKRAADSADSPILE 368
           K+++ F+YW  L  +  +IG T+    ST+V +    +AD   LE
Sbjct: 290 KVLLHFIYWDELPDMQELIG-TDSTLASTLVAQHLLAAADRYALE 333


>At3g52525.1 68416.m05776 ovate protein, putative 83% similar to
           ovate protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 159

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 557 HSSXAYSMPANTPSRTPSVAVRRSS 631
           HSS + + P++TP  T SVAV + S
Sbjct: 50  HSSISSATPSSTPLATASVAVEKDS 74


>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 26/95 (27%), Positives = 42/95 (44%)
 Frame = +2

Query: 353 LTDTGGGRREWLGTEAKTSRQIWRTRDTRVQWISTSRRARTKKKPIRSVQKAQANGVRRS 532
           LT+ GG RR   G +   SR +  +    V   +T+    T      S   + A  +R S
Sbjct: 22  LTNNGGQRRP-RGKQVP-SRYLSPSPSHSVSSTTTTTTTTTTTTSSSSSSSSSAI-LRTS 78

Query: 533 KHYVVKTPHSSXAYSMPANTPSRTPSVAVRRSSGI 637
           K Y   +P  S + +  A+   +TPS+  +RS  +
Sbjct: 79  KRYPSPSPLLSRSTTNSASNSIKTPSLLPKRSQSV 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,872,736
Number of Sequences: 28952
Number of extensions: 289952
Number of successful extensions: 962
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)