Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0532
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 31 0.67
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 0.88
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 30 1.2
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 2.7
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 29 3.6
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 3.6
At5g15430.1 68418.m01806 calmodulin-binding protein-related has ... 28 4.7
At3g57780.1 68416.m06436 expressed protein 28 4.7
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 6.2
At1g51900.1 68414.m05850 hypothetical protein 28 6.2
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 8.2
At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger) fa... 27 8.2
At3g28770.1 68416.m03591 expressed protein 27 8.2
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 27 8.2
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 27 8.2
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +3
Query: 276 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 449
K +E P P+ + + EK+ FLNG K KNP+P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 270 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQ 446
Q+K + +E+N K+ +E + + K +E + +LK T E+N ++ IE
Sbjct: 778 QIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKLREAIEL 837
Query: 447 EKSAXXXXXXXXXANVSR 500
E+ A + R
Sbjct: 838 EEKEKRLIEAFERAEIER 855
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 252 RKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPT 428
+K + +LK T +E+N ++AIE E+++ + + E + +LK E+ +
Sbjct: 811 QKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRL 870
Query: 429 KDVIEQEK 452
++ E+E+
Sbjct: 871 QEAKERER 878
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 225 LLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 106
++ GN +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 282 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 377
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +1
Query: 4 RVAECTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 183
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569
Query: 184 KIVLPSAEDVATEK 225
AED A E+
Sbjct: 570 ----LDAEDRAAER 579
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 73 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 237
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At5g15430.1 68418.m01806 calmodulin-binding protein-related has
weak similarity to calmodulin-binding proteins
Length = 478
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -2
Query: 375 RSSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGSNQTFDTVE*RLLGLLSGNVFSRR 196
R SR SG + SPLR + + SP RC S G FD + ++ SG ++
Sbjct: 70 RVSRSFSGAINLDSPLRKKALTKPLLSPSRRCDSVGG---FDHAKSQVRNFSSGVCDVKK 126
Query: 195 KH 190
H
Sbjct: 127 SH 128
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 261 DSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE 410
DSS+ TE +E N L D E EKE++K L+ I + + ETCE
Sbjct: 72 DSSE--KTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPETCE 120
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 270 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 449
QL+ T+ + K P E +K K D K ++ E C P+P + ++E
Sbjct: 413 QLEETDVKRKRNAPGPSPKEPAMKKQK-----SEMDCDKEENAEDCFGEPVPERFIVEMR 467
Query: 450 KS 455
+S
Sbjct: 468 RS 469
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +3
Query: 225 DPEVFIRRYRKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTET 404
DP+++IR Y + + K + T + + + D+IE K + L+ I LK +
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEG--VKCRMLDEIMKKSGHHLKISRP 419
Query: 405 CEKNPLPTKDVIEQEK 452
E P K V E+E+
Sbjct: 420 -EYKPEIEKQVYEEEE 434
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 270 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 449
QL+ T+ + K P E +K I D K ++ E C P+P + ++E
Sbjct: 359 QLEETDVKRKRNAPGPSPKEPAMKKQ-----ISEMDCDKEENAEDCFGEPVPERFIVEMR 413
Query: 450 KS 455
+S
Sbjct: 414 RS 415
>At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 210
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 222 EDPEVFIRRYRKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 401
++ E+ Y FDS+ E + L D+++ +E++ FL + DP +L + E
Sbjct: 62 DEEEINENYYEYFDSNGFGVDEDEINEFLEDQESNSNLEEEDDFLEEEDEIDPDQLSYEE 121
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 276 KHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKD 434
K +E EK + KDA E + NK L+ EN D K + E +++ +KD
Sbjct: 780 KESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKD 833
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +2
Query: 290 SGEEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKGRH*AREISLNHY 469
S E+ A R + + K + ER + SH ++ +R EP H RE+ Y
Sbjct: 489 SAEQKAQEIRAAAASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEY 548
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 231 EVFIRRYRKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 377
E +R ++ ++ K T K + +KDA EA KE+ NG+ N D
Sbjct: 45 EFLSKRKQEHEAKSSKRTRPASK--VIEKDASEASKEETPSENGMNNGD 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,866
Number of Sequences: 28952
Number of extensions: 263327
Number of successful extensions: 863
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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