Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0525
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    29   1.1  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    28   1.5  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    28   2.0  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   6.1  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    26   8.0  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   8.0  

>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 515 WHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWGPLSASELAVGCEPGVI 694
           W    T IA   +D  VR++ S   F      +    +  L+W P     LA GC  G I
Sbjct: 112 WSFDGTYIATGGMDSQVRLWKSSTGFEFITAFETVDEIVWLSWHP-KGLFLAAGCNDGSI 170

Query: 695 -VWTV 706
            +W++
Sbjct: 171 WMWSL 175


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +1

Query: 100 CKLNEVYCCGNARYGNISTFSNATKKHPIINVTRDLHHHRTSDENI 237
           C   EVYC     YG ++       K  I+ + ++ + H  +D  +
Sbjct: 480 CNALEVYCPAQREYGRLNVVGTLMSKRKIMKLVKEGYVHGWNDPRL 525


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 482 ELGSSASQMLAWHPHTTKIAVATVDDNVRVYCSE--VTFVSTLKCKAQGHVSSLNWGPLS 655
           E  S      AWHP     AVA+ D  V V   +  +     L  +    V+ ++W    
Sbjct: 183 EAESEICSKAAWHPKNGTFAVASTDHFVSVISPDDWLPLYKLLPKENHSGVTDISWSSNG 242

Query: 656 ASELAVGCEPGVIVW 700
               A   + G+++W
Sbjct: 243 MYIAASFKKGGILIW 257


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/74 (16%), Positives = 33/74 (44%)
 Frame = +2

Query: 509 LAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWGPLSASELAVGCEPG 688
           L W   +  +    +D+++R+Y +    + T K     +V  + W PL+   ++   +  
Sbjct: 134 LCWSVDSNFLIAGAMDNSLRLYDAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVSESSDRS 193

Query: 689 VIVWTVXPKFXGPQ 730
           + ++ +  +   P+
Sbjct: 194 ICLYEIQEEKKNPK 207


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 734 LLPGMLVPFGKNXGPFPLTDGXXGL 808
           ++PG+L   GK   P+P  D   G+
Sbjct: 392 IVPGVLTEHGKTKNPYPNVDSHSGV 416


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 509 LAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWGPLSASELAVGCEPG 688
           +A  P+   IAV ++D  +RV+    T V  L+   +  V S+ + P S+  L+   +  
Sbjct: 449 IAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKES-VYSIAFSPDSSILLSGSLDKT 507

Query: 689 VIVW 700
           + VW
Sbjct: 508 IKVW 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,574
Number of Sequences: 5004
Number of extensions: 68406
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)