Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0525
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0190 - 1404374-1404402,1404491-1404558,1404830-1404967,140...    37   0.018
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149...    37   0.018
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    36   0.032
02_04_0651 - 24737953-24738114,24738205-24738375,24738534-247386...    31   0.91 
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    28   8.5  

>12_01_0190 -
           1404374-1404402,1404491-1404558,1404830-1404967,
           1405414-1405465,1405570-1405669,1406938-1407088,
           1407212-1407311,1407471-1407585,1407786-1407950,
           1408050-1408105,1408199-1408256
          Length = 343

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 500 SQMLAWHPHTTKIAVATVDDNVRVYCSEVTFVST---LKCKAQGHVSSLNWGPLSASELA 670
           +Q ++W+PH   +A  +  + V V+  E         L    Q  V ++ W P S   +A
Sbjct: 102 TQKVSWNPHKHCLAFVSGKNQVTVHDFEEPDNKESYILTSDHQKDVKAVEWRPNSGKVIA 161

Query: 671 VGCEPGVIVWT 703
           VGC+ G+ +W+
Sbjct: 162 VGCKGGICLWS 172


>11_01_0189 -
           1493618-1493637,1493728-1493795,1494070-1494207,
           1494647-1494698,1494803-1494902,1495606-1495681,
           1495757-1495844,1496248-1496342,1496506-1496605,
           1496765-1496879,1497077-1497241,1497362-1497547
          Length = 400

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 500 SQMLAWHPHTTKIAVATVDDNVRVYCSEVTFVST---LKCKAQGHVSSLNWGPLSASELA 670
           +Q ++W+PH   +A  +  + V V+  E         L    Q  V ++ W P S   +A
Sbjct: 126 TQKVSWNPHKHCLAFVSGKNQVTVHDFEEPDNKESYILTSDHQKDVKAVEWRPNSGKMIA 185

Query: 671 VGCEPGVIVWT 703
           VGC+ G+ +W+
Sbjct: 186 VGCKGGICLWS 196


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 36.3 bits (80), Expect = 0.032
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +2

Query: 494 SASQMLAWHPHTTKIAVATVDDNVRVYCSEV-TFVSTLKCKAQGHVSSLNWGPLSASELA 670
           S +  L W P    +AV  + +NV +Y  +    V TLK + +  V SL W P     + 
Sbjct: 207 SINNALCWSPDGQFLAVPGLRNNVVMYDRDTGEEVFTLKGEHEQPVCSLCWSPNGRYLVT 266

Query: 671 VGCEPGVIVWTVXPK 715
            G +  V++W V  K
Sbjct: 267 AGLDKQVLIWDVKSK 281


>02_04_0651 -
           24737953-24738114,24738205-24738375,24738534-24738632,
           24738738-24738938,24739234-24739341,24739531-24739810,
           24739962-24740089
          Length = 382

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 207 TSSQNIRREYFHVHRCEDNLLKKITSVWYKQGFLEAL 317
           T +  I  E  ++H CE+ L +++ S W+  G L AL
Sbjct: 313 TPAMRIPEEMKNIHSCENWLPRRVMSAWHIAGILHAL 349


>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 530 TKIAVATVDDNVRVYCS---EVTFVSTLKCKAQGHVSSLNWGPLSASELAVGCEPGV 691
           ++I V T D NV +YCS   + T+   L  +  G      W  L ++E+    +P +
Sbjct: 545 SRIIVTTKDSNVAIYCSGEKQYTYNYKLGSQNDGTAVGSEWVGLDSNEINSETKPSM 601


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,576,923
Number of Sequences: 37544
Number of extensions: 430511
Number of successful extensions: 996
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)