Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0525
         (870 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33565| Best HMM Match : SET (HMM E-Value=3.99931e-42)               32   0.53 
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   29   3.7  
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)               29   6.5  
SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_33565| Best HMM Match : SET (HMM E-Value=3.99931e-42)
          Length = 601

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +1

Query: 112 EVYCCGNARYGNISTFSNATKKHPIINVTRDLHHHRTSDENISMYIDVKIICSKKLLVFG 291
           E++C    R+GNIS F N + + P    TR   +H+ S   +S  ++++    +  L FG
Sbjct: 403 ELFCIDALRFGNISRFINHSCE-PNCIPTRVFVNHQPSTTIVSHSVNIRQANERYRLTFG 461

Query: 292 TN 297
            N
Sbjct: 462 KN 463


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 855 PGXPXKTXPKXXPXLGSPXXPSVNGNGP 772
           PG P    P   P  G+P  P++NG  P
Sbjct: 204 PGFPGGAPPPPPPPFGAPPPPALNGGPP 231


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = -1

Query: 807 SPXXPSVNGNGPXFFPNGTSIPGRRFWGPXNLGSTVHTMTPGSQPTASSEADRGPQFSDD 628
           SP  P     GP   P+G    GR+  G    G       PG+ P     A +GP  S D
Sbjct: 730 SPDGPGTGRKGPRTSPDGPGT-GRKGPGTSPDGPGNGRKGPGTSPDGPGNARKGPGTSPD 788


>SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)
          Length = 823

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 441 DIGPKIVANYSRTRNWGQVPVKC*HGILTQQKLL 542
           DI   +V+ +S    W QVP KC +GI+   KLL
Sbjct: 328 DIRFDVVSPWSVIVIWDQVPEKCRNGIILGYKLL 361


>SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +1

Query: 151 STFSNATKKHPIINVTRDLHHHRTSDEN 234
           + F+  T+++ ++N+ RDL +H T D++
Sbjct: 395 NVFTAQTEEYAVVNMNRDLDNHDTHDDD 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,289,906
Number of Sequences: 59808
Number of extensions: 520261
Number of successful extensions: 1173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)