Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0525
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fus... 29 4.3
EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell f... 29 4.3
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 29 5.7
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 29 5.7
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 29 5.7
Z11126-7|CAO82061.1| 522|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z11126-6|CAA77471.2| 480|Caenorhabditis elegans Hypothetical pr... 28 7.5
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 10.0
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 28 10.0
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 10.0
>U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fusion
failure protein1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 424 KKYLKAVKIFATFKM*DAVTANVGLSLLTEGSAAXLRASKNPCLYQTLVIFLSKLSSHLC 245
K Y+ K+ ATF A TA G SL +GS L ++ N + ++ S +C
Sbjct: 421 KMYVNDRKLIATF----ACTAQFGTSLKDDGSRISLPSTINQAQWVCILPDEQPTKSEIC 476
Query: 244 TW 239
W
Sbjct: 477 KW 478
>EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell
fusion failure-1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 424 KKYLKAVKIFATFKM*DAVTANVGLSLLTEGSAAXLRASKNPCLYQTLVIFLSKLSSHLC 245
K Y+ K+ ATF A TA G SL +GS L ++ N + ++ S +C
Sbjct: 421 KMYVNDRKLIATF----ACTAQFGTSLKDDGSRISLPSTINQAQWVCILPDEQPTKSEIC 476
Query: 244 TW 239
W
Sbjct: 477 KW 478
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 626 VSSLNWGPLSASELAVGCEPGVI-VWTVXPKFXGPQN-LLPGMLVPFG 763
V+ L+W P +LAVG + G I +W + GP+N + P ++ G
Sbjct: 631 VTDLHWNPFDDEQLAVGTDCGQINLWRLTTN-DGPRNEMEPEKIIKIG 677
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 626 VSSLNWGPLSASELAVGCEPGVI-VWTVXPKFXGPQN-LLPGMLVPFG 763
V+ L+W P +LAVG + G I +W + GP+N + P ++ G
Sbjct: 631 VTDLHWNPFDDEQLAVGTDCGQINLWRLTTN-DGPRNEMEPEKIIKIG 677
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 626 VSSLNWGPLSASELAVGCEPGVI-VWTVXPKFXGPQN-LLPGMLVPFG 763
V+ L+W P +LAVG + G I +W + GP+N + P ++ G
Sbjct: 631 VTDLHWNPFDDEQLAVGTDCGQINLWRLTTN-DGPRNEMEPEKIIKIG 677
>Z11126-7|CAO82061.1| 522|Caenorhabditis elegans Hypothetical
protein ZK643.3b protein.
Length = 522
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 36 YKQNVNFSQLPKPTWSRRNCFL*IK*SILLRQCPIW*Y 149
Y V+ S P PTW NCF ++ +QCP + Y
Sbjct: 137 YHHRVDDSPCP-PTWDGWNCFDSATPGVVFKQCPNYIY 173
>Z11126-6|CAA77471.2| 480|Caenorhabditis elegans Hypothetical
protein ZK643.3a protein.
Length = 480
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 36 YKQNVNFSQLPKPTWSRRNCFL*IK*SILLRQCPIW*Y 149
Y V+ S P PTW NCF ++ +QCP + Y
Sbjct: 137 YHHRVDDSPCP-PTWDGWNCFDSATPGVVFKQCPNYIY 173
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -1
Query: 855 PGXPXKTXPKXXPXLGSPXXPSVNGNGPXFFPNGTSIPGRRFWGPXNLGSTVHTMTPGS 679
PG P + P+ P GSP P +G+ P G + P + N G+ PGS
Sbjct: 218 PGPPGEAGPQGPP--GSPGQPGADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPPGS 274
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -1
Query: 855 PGXPXKTXPKXXPXLGSPXXPSVNGNGPXFFPNGTSIPGRRFWGPXNLGSTVHTMTPGS 679
PG P + P+ P GSP P +G+ P G + P + N G+ PGS
Sbjct: 217 PGPPGEAGPQGPP--GSPGQPGADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPPGS 273
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -1
Query: 855 PGXPXKTXPKXXPXLGSPXXPSVNGNGPXFFPNGTSIPGRRFWGPXNLGSTVHTMTPGS 679
PG P + P+ P GSP P +G+ P G + P + N G+ PGS
Sbjct: 218 PGPPGEAGPQGPP--GSPGQPGADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPPGS 274
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,158,615
Number of Sequences: 27780
Number of extensions: 414198
Number of successful extensions: 947
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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