Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0525
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   6.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   6.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   8.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 524 HTTKIAVATVDDNVRVYCSEVTFVSTLK 607
           H T + + ++D+N   Y +++ F  T K
Sbjct: 66  HVTVMGLDSIDENSMTYAADIFFAQTWK 93


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/43 (18%), Positives = 22/43 (51%)
 Frame = +1

Query: 28  HKFISKMSIFHSFPNLPGPEETAFCKLNEVYCCGNARYGNIST 156
           H++  ++  ++     PGP++  + + +  +C  N + G + T
Sbjct: 56  HRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGT 98


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/43 (18%), Positives = 22/43 (51%)
 Frame = +1

Query: 28  HKFISKMSIFHSFPNLPGPEETAFCKLNEVYCCGNARYGNIST 156
           H++  ++  ++     PGP++  + + +  +C  N + G + T
Sbjct: 57  HRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGT 99


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 160 SNATKKHPIINVTRDLHHHRTS 225
           S   K+HPI+ +   + H +T+
Sbjct: 139 SQLIKRHPIVTIMGHVDHGKTT 160


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 674  GCEPGVIVWTVXPKFXGPQNLLPGMLVP 757
            GC+PG +V +  P    P     G   P
Sbjct: 972  GCQPGGVVQSQQPIMTDPSPFKRGRYTP 999


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,988
Number of Sequences: 438
Number of extensions: 5068
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)