Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0525
(870 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 32 0.57
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 31 0.76
At3g56900.1 68416.m06329 aladin-related / adracalin-related weak... 30 1.7
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 30 2.3
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 30 2.3
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 29 5.3
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 28 7.1
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 28 7.1
At1g70370.1 68414.m08095 BURP domain-containing protein / polyga... 28 7.1
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 28 7.1
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 28 9.3
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 509 LAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWGPLSASELAVGCEPG 688
L W+ T +A + D R++ +STL K +G + SL W L +
Sbjct: 330 LDWNGEGTLLATGSCDGQARIWTLNGELISTLS-KHKGPIFSLKWNKKGDYLLTGSVDRT 388
Query: 689 VIVWTV 706
+VW V
Sbjct: 389 AVVWDV 394
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 497 ASQMLAWHPHTTKI-AVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWGPLSASELAV 673
AS LA+HP I A+ D ++ +Y V V T Q H++ L + ++
Sbjct: 874 ASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSS 933
Query: 674 GCEPGVIVWT 703
G + + WT
Sbjct: 934 GADAQLFFWT 943
>At3g56900.1 68416.m06329 aladin-related / adracalin-related weak
similarity to SP|Q9NRG9 Aladin (Adracalin) (GL003) {Homo
sapiens}; non-consensus AT-AC splice sites at intron 6
Length = 447
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 602 LKCKAQGHVSSLNWGPLSASELAVGCEPGVIVW 700
L +Q +V +L W P L++ C G+ +W
Sbjct: 139 LTSDSQRNVKALEWRPNGGKSLSIACRGGICIW 171
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 494 SASQMLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKA 616
S+ +AWHP+ +A + D RV+ + + V T KA
Sbjct: 146 SSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKDSKA 186
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 494 SASQMLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKA 616
S+ +AWHP+ +A + D RV+ + + V T KA
Sbjct: 146 SSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKDSKA 186
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/64 (20%), Positives = 28/64 (43%)
Frame = +2
Query: 509 LAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWGPLSASELAVGCEPG 688
L W P + +A ++D+ V ++ +T+ V + W P+ + + +
Sbjct: 124 LNWSPDDSMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKT 183
Query: 689 VIVW 700
VI+W
Sbjct: 184 VIIW 187
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 509 LAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLK-CKAQGHVSSLN---WGPLSASELAVG 676
+AW+ + TK+A +VD R++ E S K + +GH S++ W P + +A
Sbjct: 26 VAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKHSDLVATA 85
Query: 677 C-EPGVIVW 700
+ V +W
Sbjct: 86 SGDKSVRLW 94
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 503 QMLAWHPHTTKIAVATVDDNVRVYCSE-----VTFVSTLKCKAQGHVSSL 637
+M+ WHP + + D+ ++++CSE V TL GH S++
Sbjct: 143 KMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQTLSELNNGHSSTV 192
>At1g70370.1 68414.m08095 BURP domain-containing protein /
polygalacturonase, putative similar to polygalacturonase
isoenzyme 1 beta subunit [Lycopersicon esculentum]
GI:170480; contains Pfam profile PF03181: BURP domain
Length = 626
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 563 VRVYCSEVTFVSTLKCKAQG----HVSSLNWGPLSASELAVGCEPGVI 694
VRVY +++ +++ K G H+ + +WGP + LA+G +PG I
Sbjct: 562 VRVYEADLLELNSKKKINHGIAICHMDTSSWGPSHGAFLALGSKPGRI 609
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +2
Query: 512 AWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWGPLSASELAVG-CEPG 688
AW PH AT + +V+ + ++ + + HV +++ P L E G
Sbjct: 175 AWDPHDVNAVAATGESSVQFW--DLRTMKKVNSIEHAHVRGVDYNPKREHILVTAEDESG 232
Query: 689 VIVWTVXPKFXGPQNLLPG 745
+ VW + K P LPG
Sbjct: 233 IHVWDLR-KAKVPVQELPG 250
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 494 SASQMLAWHPHTTKIAVATVDDNVRVYCSEVTFVST 601
S+ +AWHP+ +A + D RV+ + + V T
Sbjct: 146 SSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDT 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,641,543
Number of Sequences: 28952
Number of extensions: 355492
Number of successful extensions: 891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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