Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0524
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   110   2e-25
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.3  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   1.3  
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    28   1.7  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    28   1.7  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   3.9  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   5.1  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   6.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.7  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  110 bits (264), Expect = 2e-25
 Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
 Frame = +3

Query: 255 DTVLLKGKRRKETVCIVLSDDNXPDEXIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
           DTV++KGKRRK+TV IVL+D+   D   R+             D+V+I PCP +KY +R+
Sbjct: 75  DTVVVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERI 134

Query: 435 HILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSA-GACAPSSSKWVETDPSPF 611
            +LP+ D+VEGLTG+LF+VYLKPY      R I     +   G+      K V+  P  F
Sbjct: 135 SVLPLADTVEGLTGSLFDVYLKPYFVE-AYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEF 193

Query: 612 CIVAPDTVIHCGGEXI 659
            IV+ DT+IH  GE I
Sbjct: 194 GIVSQDTIIHWEGEPI 209



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 30/54 (55%), Positives = 39/54 (72%)
 Frame = +1

Query: 94  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRG
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRG 74


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 498 KPYLWRLTVRSIVTTPSWSAGACAPSSSK 584
           KPYL R+  + ++ TPS S+   A S+ K
Sbjct: 73  KPYLLRIVTKGLIYTPSLSSANDAQSAGK 101


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 119 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 232
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -1

Query: 462 QLNHQLAVCGXV---FHISLKDTERWI 391
           QLN ++  CG +   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -1

Query: 462 QLNHQLAVCGXV---FHISLKDTERWI 391
           QLN ++  CG +   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 68  FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 241
           F+++N K   KW++  A+    P  S + + PT+S   + + SA TT     +RP  S  
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342

Query: 242 NS 247
            S
Sbjct: 343 RS 344


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 607 GDGSVSTHFELDGAHAPAD--HEGVVTMDRTVSLHKYGFKYTSNRLPVRPSTESSIGSMW 434
           G G    H  L  +H PA+   E +  +  T ++   G   T   +PV P+   ++G + 
Sbjct: 349 GVGPEKDHCYLQLSHLPAEILKERLPGISETAAIFA-GVDVTKEPIPVLPTVHYNMGGIP 407

Query: 433 TRF 425
           TRF
Sbjct: 408 TRF 410


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 229 MEQLQLFRGTQSCSRANAARKPFASCSQTIIXLMR 333
           + Q QLF+  +  S  N  R+ F    QTI+ +MR
Sbjct: 80  LTQNQLFKNVEDYSFYNLNREKFQRDKQTIVGVMR 114


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 118 PD-DLSTAILRRKDRPNRLIVEEAVSD 195
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 91  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 249
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,622
Number of Sequences: 5004
Number of extensions: 55206
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)