Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0524
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 140 8e-34
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 136 2e-32
08_02_0657 - 19749835-19751942,19753123-19753561 91 1e-18
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 31 0.76
03_02_0401 - 8146758-8146912,8147151-8147235,8147502-8147567,814... 28 9.3
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 140 bits (340), Expect = 8e-34
Identities = 71/136 (52%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Frame = +3
Query: 255 DTVLLKGKRRKETVCIVLSDDNXPDEXIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
DTVLLKGK+RK+T+CIVL+DD + IRM DVVS+ CP VKYGKRV
Sbjct: 62 DTVLLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRV 121
Query: 435 HILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSA-GACAPSSSKWVETDPSPF 611
HILPIDD+VEG+TGNLF+ +LKPY R + + G K +ETDP+ +
Sbjct: 122 HILPIDDTVEGITGNLFDAFLKPYFLE-AYRPLRKGDLFLVRGGMRSVEFKVIETDPAEY 180
Query: 612 CIVAPDTVIHCGGEXI 659
CIVAPDT I C GE I
Sbjct: 181 CIVAPDTEIFCDGEPI 196
Score = 64.9 bits (151), Expect = 7e-11
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +1
Query: 103 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRG
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRG 61
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 136 bits (329), Expect = 2e-32
Identities = 69/136 (50%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
Frame = +3
Query: 255 DTVLLKGKRRKETVCIVLSDDNXPDEXIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
DTVLLKGK+RK+T+CIVL+D+ + IRM DVVS+ C VKYGKRV
Sbjct: 62 DTVLLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRV 121
Query: 435 HILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSA-GACAPSSSKWVETDPSPF 611
HILPIDD+VEG+TGNLF+ +LKPY R + + G K +ETDP+ +
Sbjct: 122 HILPIDDTVEGITGNLFDAFLKPYFLE-AYRPVRKGDLFLVRGGMRSVEFKVIETDPTEY 180
Query: 612 CIVAPDTVIHCGGEXI 659
CIVAPDT I C GE I
Sbjct: 181 CIVAPDTEIFCDGEPI 196
Score = 68.5 bits (160), Expect = 5e-12
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +1
Query: 103 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRG
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRG 61
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 90.6 bits (215), Expect = 1e-18
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Frame = +3
Query: 255 DTVLLKGKRRKETVCIVLSDDNXPDEXIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
D V L+G+RR+E VC D++ PD +R+ D+V++ PCP+++ KRV
Sbjct: 65 DLVTLRGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRV 124
Query: 435 HILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSA-GACAPSSSKWVETDP-SP 608
+ P DDSVEG++G+LFE YLKPY +R + + G K ++T+P +
Sbjct: 125 QLRPFDDSVEGISGDLFEPYLKPYFMD-ALRPVKKGDRFLVRGHMHAVEFKVMDTEPNNE 183
Query: 609 FCIVAPDTVIHC 644
IVA DT I C
Sbjct: 184 PVIVAGDTEIFC 195
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Frame = +1
Query: 124 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGTQSCSRANAAR 288
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRG R R
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 289 K 291
+
Sbjct: 76 E 76
>01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 447 IDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSAGACAPSSSKWVETDPSPFCIVAP 626
+ S + +F V +PY+ T+R + P+W+ C S++ TDP F +
Sbjct: 1469 LQSSKQRRDNGIFFVPQRPYMVLGTLRQQLLYPTWTEDVCHSSNNDPQSTDPLTFEVSTS 1528
Query: 627 DTV 635
D V
Sbjct: 1529 DGV 1531
>03_02_0401 -
8146758-8146912,8147151-8147235,8147502-8147567,
8147744-8147802,8147911-8148013,8148227-8148358,
8148447-8148527,8148729-8148821,8148978-8149061,
8149242-8149300,8149405-8149481,8149639-8149789,
8150302-8150437
Length = 426
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 506 LMEAYRPIHRDDTFMVRGGMRAVE 577
+ +AYRP H D T+ + G+RAV+
Sbjct: 146 MAKAYRPSHADATYDFKYGVRAVQ 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,120,380
Number of Sequences: 37544
Number of extensions: 393825
Number of successful extensions: 970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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