Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0524
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         77   2e-14
SB_25126| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 35/45 (77%), Positives = 42/45 (93%)
 Frame = +1

Query: 121 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRG
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRG 49



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +3

Query: 582 KWVETDPSPFCIVAPDTVIHCGGEXIXNVRKK*EALN 692
           K +ETDPSP+CIVAPDTVIHC GE +    ++ E+LN
Sbjct: 118 KVIETDPSPYCIVAPDTVIHCEGEPVKREEEE-ESLN 153



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 25/46 (54%), Positives = 29/46 (63%)
 Frame = +3

Query: 255 DTVLLKGKRRKETVCIVLSDDNXPDEXIRMXXXXXXXXXXXXSDVV 392
           DTVL+KGK+RK+TVCIVLSDD   D+ IRM             DVV
Sbjct: 50  DTVLIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95



 Score = 33.1 bits (72), Expect = 0.25
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 539 DTFMVRGGMRAVEFKV 586
           D F+VRGGMRAVEFKV
Sbjct: 104 DMFLVRGGMRAVEFKV 119


>SB_25126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 125 IYRPRSSVART--DPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVG 256
           I+RP   +A+   DP +    K SA  T     HRP +S+   S+G
Sbjct: 49  IHRPSDPLAQRIIDPEIHRPSKPSAQRTIGPANHRPSYSSTQRSIG 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,652,746
Number of Sequences: 59808
Number of extensions: 433151
Number of successful extensions: 1188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)