Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0524
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   136   1e-32
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   136   1e-32
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   131   4e-31
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a...    31   0.84 
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    29   4.5  
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a...    28   7.8  

>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  136 bits (329), Expect = 1e-32
 Identities = 65/136 (47%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
 Frame = +3

Query: 255 DTVLLKGKRRKETVCIVLSDDNXPDEXIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
           DT+L+KGK+RK+TVCI L+D+   +  IRM             DV+S+  CP VKYGKRV
Sbjct: 59  DTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRV 118

Query: 435 HILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSA-GACAPSSSKWVETDPSPF 611
           HILP+DD+VEG+TGNLF+ YLKPY      R +     +   G       K +ETDP+ +
Sbjct: 119 HILPVDDTVEGVTGNLFDAYLKPYFLE-AYRPVRKGDLFLVRGGMRSVEFKVIETDPAEY 177

Query: 612 CIVAPDTVIHCGGEXI 659
           C+VAPDT I C GE +
Sbjct: 178 CVVAPDTEIFCEGEPV 193



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 32/51 (62%), Positives = 41/51 (80%)
 Frame = +1

Query: 103 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
           +D+K+  D STAIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLFRG
Sbjct: 8   SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRG 58


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  136 bits (329), Expect = 1e-32
 Identities = 65/136 (47%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
 Frame = +3

Query: 255 DTVLLKGKRRKETVCIVLSDDNXPDEXIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
           DT+L+KGK+RK+TVCI L+D+   +  IRM             DV+S+  CP VKYGKRV
Sbjct: 59  DTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRV 118

Query: 435 HILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSA-GACAPSSSKWVETDPSPF 611
           HILP+DD+VEG+TGNLF+ YLKPY      R +     +   G       K +ETDP+ +
Sbjct: 119 HILPVDDTVEGVTGNLFDAYLKPYFLE-AYRPVRKGDLFLVRGGMRSVEFKVIETDPAEY 177

Query: 612 CIVAPDTVIHCGGEXI 659
           C+VAPDT I C GE +
Sbjct: 178 CVVAPDTEIFCEGEPV 193



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/51 (66%), Positives = 42/51 (82%)
 Frame = +1

Query: 103 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
           +D+KS  D STAIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLFRG
Sbjct: 8   SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRG 58


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  131 bits (317), Expect = 4e-31
 Identities = 62/136 (45%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
 Frame = +3

Query: 255 DTVLLKGKRRKETVCIVLSDDNXPDEXIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
           DT+L+KGK+RK+TVCI L+D+   +  IRM             DV+S+  CP VKYG RV
Sbjct: 60  DTILIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRV 119

Query: 435 HILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSA-GACAPSSSKWVETDPSPF 611
           HILP+DD++EG++GN+F+ YLKPY      R +     +   G       K +ETDP+ +
Sbjct: 120 HILPLDDTIEGVSGNIFDAYLKPYFLE-AYRPVRKGDLFLVRGGMRSIEFKVIETDPAEY 178

Query: 612 CIVAPDTVIHCGGEXI 659
           C+VAPDT I C GE I
Sbjct: 179 CVVAPDTEIFCEGEPI 194



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 30/52 (57%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
 Frame = +1

Query: 103 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
           +D+K +  D STAIL +K   NRL+V+EA++DDNSVV+L    ME+LQLFRG
Sbjct: 8   SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRG 59


>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 1007

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 402 PCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSAG 560
           P P +  GK    L   +   G++G L E  L  YL +LTV S   +P+ S G
Sbjct: 678 PSPELPLGKTAADLAYANGHRGISGFLAESSLTSYLEKLTVDSKENSPANSCG 730


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 252 TEELKLLHFGL*KCHD*VVIAD 187
           TEELK+ H+ L KC D +V+A+
Sbjct: 4   TEELKISHYKLYKCFDFLVVAN 25


>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1050

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 402 PCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSAGACA 569
           P P    GK    L   +   G++G L E  L  YL +LTV +   + + S+GA A
Sbjct: 727 PSPEHPLGKTAADLAYGNGHRGISGFLAESSLTSYLEKLTVDAKENSSADSSGAKA 782


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,733,267
Number of Sequences: 28952
Number of extensions: 304390
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)