Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0523
         (858 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.4  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   7.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   9.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 331 SSGQLSSESTMQTVSLRRLPLSKTVSHGRVEVAP 230
           +SG  +S +T   +S  R+P   T SH   ++ P
Sbjct: 19  NSGDSTSSATSIDLSTFRVPTYGTTSHPTSKLVP 52


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 331 SSGQLSSESTMQTVSLRRLPLSKTVSHGRVEVAP 230
           +SG  +S +T   +S  R+P   T SH   ++ P
Sbjct: 19  NSGDSTSSATSIDLSTFRVPTYGTTSHPTSKLVP 52


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 163 WVCPCDGGSRSINHQGFYYLPFYS 92
           W+C     + S   + FYYLP  S
Sbjct: 49  WICALVNYNVSEISENFYYLPAMS 72


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 778 RMTQWQFHHLP*IWRQLFATTAG 710
           R  ++ F     +W QLF+T AG
Sbjct: 85  RFMKYHFFGTLKLWSQLFSTFAG 107


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 551 VRGGMRAVEFKVVETDPSPFCIVAPD 628
           +RG  R   +KV E  PSP   V+P+
Sbjct: 101 IRGPKRKT-WKVEEDSPSPTSSVSPE 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,113
Number of Sequences: 336
Number of extensions: 4697
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)