Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0523
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    97   2e-21
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    30   0.37 
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    29   0.64 
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    29   1.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.1  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    29   1.1  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    29   1.1  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    28   1.5  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   1.5  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    28   2.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   2.0  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   3.4  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   3.4  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   7.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   7.9  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 43/84 (51%), Positives = 59/84 (70%)
 Frame = +3

Query: 255 DTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
           DTV++KGKRRK+TV IVL+D+   D   R+             D+V+I PCP +KY +R+
Sbjct: 75  DTVVVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERI 134

Query: 435 HILPIDDSVEGLTGNLFEVYLKPY 506
            +LP+ D+VEGLTG+LF+VYLKPY
Sbjct: 135 SVLPLADTVEGLTGSLFDVYLKPY 158



 Score = 96.3 bits (229), Expect = 5e-21
 Identities = 50/97 (51%), Positives = 62/97 (63%)
 Frame = +2

Query: 494 LEAVLMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*XR 673
           L+   +EAYRPI + D F+VRG MR VEFKVV+  P  F IV+ DT+IH +GEPI     
Sbjct: 155 LKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDE 214

Query: 674 RGSTKCCRAMMTSGGCRKQLAPNLREMVELPLRHPSL 784
             S          GGCR+Q+A  +RE+VELPLRHP L
Sbjct: 215 ESSLAEV-GYDDIGGCRRQMA-QIRELVELPLRHPQL 249



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 30/54 (55%), Positives = 39/54 (72%)
 Frame = +1

Query: 94  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRG
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRG 74


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 713 GGCRKQLAPNLREMVELPLRHPSLVQXYLELKLPTXAFLHVLGP 844
           GG  KQ+   ++E++ELP++HP L +    L +P    + + GP
Sbjct: 148 GGLEKQIK-EIKEVIELPVKHPELFE---SLGIPQPKGILLYGP 187


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +2

Query: 713 GGCRKQLAPNLREMVELPLRHPSLVQXYLELKLPTXAFLHVLGP 844
           GGC++Q+   LRE+VELPL  P   + +++L +     + + GP
Sbjct: 182 GGCKEQIE-RLREVVELPLLSP---ERFVKLGIDPPKGIMLYGP 221


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 462 QLNHQLAVCGLV---FHISLKDTERWI 391
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 498 KPYLWRLTVRSIVTTPSWSAGACAPSSSKWSKQ 596
           KPYL R+  + ++ TPS S+   A S+ K   Q
Sbjct: 73  KPYLLRIVTKGLIYTPSLSSANDAQSAGKNENQ 105


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 462 QLNHQLAVCGLV---FHISLKDTERWI 391
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 229 MEQLQLFRGTQSCSRANAARKPFASCSQTIIALMRK 336
           + Q QLF+  +  S  N  R+ F    QTI+ +MRK
Sbjct: 80  LTQNQLFKNVEDYSFYNLNREKFQRDKQTIVGVMRK 115


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 713 GGCRKQLAPNLREMVELPLRHPSLVQXYLELKLPTXAFLH 832
           GG   Q+   ++E VELPL HP L +  + +K P    L+
Sbjct: 194 GGLESQIQ-EIKEAVELPLTHPELYEE-MGIKPPKGVILY 231


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 119 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 232
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 713 GGCRKQLAPNLREMVELPLRHPSL 784
           GG  +Q+   LRE++ELPL++P L
Sbjct: 135 GGLNEQIR-ELREVIELPLKNPEL 157


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 432 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 322
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 589 DHFELDGAHAPAD--HEGVVTMDRTVSLHKYGFKYTSNRLPVRPSTESSIGSMWTRF 425
           DH  L  +H PA+   E +  +  T ++   G   T   +PV P+   ++G + TRF
Sbjct: 355 DHCYLQLSHLPAEILKERLPGISETAAIFA-GVDVTKEPIPVLPTVHYNMGGIPTRF 410


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 68  FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 241
           F+++N K   KW++  A+    P  S + + PT+S   + + SA TT     +RP  S  
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342

Query: 242 NS 247
            S
Sbjct: 343 RS 344


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 118 PD-DLSTAILRRKDRPNRLIVEEAVSD 195
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 91  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 249
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,645,580
Number of Sequences: 5004
Number of extensions: 74530
Number of successful extensions: 223
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)