Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0523
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         93   3e-19
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          31   1.6  
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.4  
SB_25126| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 44/66 (66%), Positives = 49/66 (74%)
 Frame = +2

Query: 539 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*XRRGSTKCCRAMMTSGG 718
           D F+VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+K      S          GG
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEV-GYDDIGG 162

Query: 719 CRKQLA 736
           CRKQLA
Sbjct: 163 CRKQLA 168



 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 35/45 (77%), Positives = 42/45 (93%)
 Frame = +1

Query: 121 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRG
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRG 49



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/46 (56%), Positives = 30/46 (65%)
 Frame = +3

Query: 255 DTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 392
           DTVL+KGK+RK+TVCIVLSDD   D+KIRM             DVV
Sbjct: 50  DTVLIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 713 GGCRKQLAPNLREMVELPLRHP 778
           GGC++Q+   LRE+VE PL HP
Sbjct: 87  GGCKEQI-DKLREVVETPLLHP 107


>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 632 VIHCDGEPIKT*XRRGSTKCCRAMMTSGGCRKQLAPNLREMVELPLRHPSLVQXY 796
           VIH  G  IK   +    K   +  + GG + Q+   +REM+E+PL +P L   Y
Sbjct: 235 VIHPFGSVIK---KDSEAKKGVSFQSIGGLKTQIQA-VREMIEMPLTNPELFTAY 285


>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 713 GGCRKQLAPNLREMVELPLRHPSLVQ 790
           GG  KQ+   ++E++ELP++HP L +
Sbjct: 180 GGLDKQIK-EIKEVIELPVKHPELFE 204


>SB_25126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 125 IYRPRSSVART--DPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVG 256
           I+RP   +A+   DP +    K SA  T     HRP +S+   S+G
Sbjct: 49  IHRPSDPLAQRIIDPEIHRPSKPSAQRTIGPANHRPSYSSTQRSIG 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,250,089
Number of Sequences: 59808
Number of extensions: 594013
Number of successful extensions: 1620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)