Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0523
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   115   4e-26
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   106   2e-23
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   106   2e-23
Z78012-4|CAB01414.1|  435|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U88170-1|AAB42248.2|  438|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   5.6  
Z98866-1|CAB11558.1|  416|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   9.8  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  115 bits (277), Expect = 4e-26
 Identities = 48/84 (57%), Positives = 65/84 (77%)
 Frame = +3

Query: 255 DTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
           D V+LKGK+RKE+V I++SD++CP+EK+RM             DVVSI P P++ YG R+
Sbjct: 61  DAVILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRI 120

Query: 435 HILPIDDSVEGLTGNLFEVYLKPY 506
           H+LPIDD++EGLTGNLF+V+LKPY
Sbjct: 121 HVLPIDDTIEGLTGNLFDVFLKPY 144



 Score =  105 bits (253), Expect = 3e-23
 Identities = 53/97 (54%), Positives = 66/97 (68%)
 Frame = +2

Query: 494 LEAVLMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*XR 673
           L+   +EAYRP+H+ D F V+  MR VEFKVVET+P+P CIV+PDT+IH +G+PIK    
Sbjct: 141 LKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEE 200

Query: 674 RGSTKCCRAMMTSGGCRKQLAPNLREMVELPLRHPSL 784
             S          GG RKQLA  ++EMVELPLRHP L
Sbjct: 201 EESMNDI-GYDDLGGVRKQLA-QIKEMVELPLRHPQL 235



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 31/48 (64%), Positives = 41/48 (85%)
 Frame = +1

Query: 112 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRG
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRG 60


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  106 bits (254), Expect = 2e-23
 Identities = 48/84 (57%), Positives = 65/84 (77%)
 Frame = +3

Query: 255 DTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
           D+V+LKGK+R+ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRV
Sbjct: 61  DSVILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRV 119

Query: 435 HILPIDDSVEGLTGNLFEVYLKPY 506
           H+LPIDD++EGLTGNLF+V+L+PY
Sbjct: 120 HVLPIDDTIEGLTGNLFDVFLRPY 143



 Score =  105 bits (253), Expect = 3e-23
 Identities = 54/97 (55%), Positives = 64/97 (65%)
 Frame = +2

Query: 494 LEAVLMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*XR 673
           L     +AYRP+H+ D F V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PIK    
Sbjct: 140 LRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEE 199

Query: 674 RGSTKCCRAMMTSGGCRKQLAPNLREMVELPLRHPSL 784
             +          GG RKQLA  ++EMVELPLRHP L
Sbjct: 200 EEALNEV-GYDDLGGVRKQLA-QIKEMVELPLRHPQL 234



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/48 (62%), Positives = 41/48 (85%)
 Frame = +1

Query: 112 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRG
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRG 60


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  106 bits (254), Expect = 2e-23
 Identities = 48/84 (57%), Positives = 65/84 (77%)
 Frame = +3

Query: 255 DTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
           D+V+LKGK+R+ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRV
Sbjct: 61  DSVILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRV 119

Query: 435 HILPIDDSVEGLTGNLFEVYLKPY 506
           H+LPIDD++EGLTGNLF+V+L+PY
Sbjct: 120 HVLPIDDTIEGLTGNLFDVFLRPY 143



 Score =  105 bits (253), Expect = 3e-23
 Identities = 54/97 (55%), Positives = 64/97 (65%)
 Frame = +2

Query: 494 LEAVLMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*XR 673
           L     +AYRP+H+ D F V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PIK    
Sbjct: 140 LRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEE 199

Query: 674 RGSTKCCRAMMTSGGCRKQLAPNLREMVELPLRHPSL 784
             +          GG RKQLA  ++EMVELPLRHP L
Sbjct: 200 EEALNEV-GYDDLGGVRKQLA-QIKEMVELPLRHPQL 234



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/48 (62%), Positives = 41/48 (85%)
 Frame = +1

Query: 112 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRG
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRG 60


>Z78012-4|CAB01414.1|  435|Caenorhabditis elegans Hypothetical
           protein C52E4.4 protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 713 GGCRKQLAPNLREMVELPLRHPSLVQXYLELKLPTXAFLHVLGP 844
           GGC+ Q+   LRE+VE PL HP   + Y+ L +     + + GP
Sbjct: 180 GGCKDQIE-KLREVVETPLLHP---ERYVNLGIEPPKGVLLYGP 219


>U88170-1|AAB42248.2|  438|Caenorhabditis elegans Hypothetical
           protein C10G11.8 protein.
          Length = 438

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 713 GGCRKQLAPNLREMVELPLRHP 778
           GGC  Q+   L+E VELPL HP
Sbjct: 186 GGCESQIQ-ELKESVELPLTHP 206


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
           protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 126 IIRAFIICHFIQNLLLESKNYYNFY 52
           ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8   LLLAFVVCLTLFNVLLWSKSNYGFY 32


>Z98866-1|CAB11558.1|  416|Caenorhabditis elegans Hypothetical
           protein Y49E10.1 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 713 GGCRKQLAPNLREMVELPLRHPSL 784
           GG  KQ+   ++E++ELP++HP L
Sbjct: 162 GGLDKQIK-EIKEVIELPVKHPEL 184


>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 637 YYGIRSHDAKW*WICFDHFELDGAHAPADHEGVVTMDRTVSLHKYGFKYTSNR 479
           Y+ I     +W  I F HF         DH+  +  D  + LHK G  YTS++
Sbjct: 107 YHAIHKGIYEWFGIDFSHF----GRTTTDHQTEICQDMFLKLHKNG--YTSSQ 153


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 91  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 240
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 91  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 240
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,632,308
Number of Sequences: 27780
Number of extensions: 442318
Number of successful extensions: 1146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)