Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0523
(858 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 118 5e-27
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 118 5e-27
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 113 2e-25
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a... 31 0.98
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 31 0.98
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 31 0.98
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.7
At4g23950.1 68417.m03444 expressed protein ; expression supporte... 29 5.2
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 29 5.2
At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive eff... 28 6.9
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a... 28 9.1
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 28 9.1
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 28 9.1
At3g10980.1 68416.m01325 expressed protein 28 9.1
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 28 9.1
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 118 bits (284), Expect = 5e-27
Identities = 50/84 (59%), Positives = 63/84 (75%)
Frame = +3
Query: 255 DTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
DT+L+KGK+RK+TVCI L+D+ C + KIRM DV+S+ CP VKYGKRV
Sbjct: 59 DTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRV 118
Query: 435 HILPIDDSVEGLTGNLFEVYLKPY 506
HILP+DD+VEG+TGNLF+ YLKPY
Sbjct: 119 HILPVDDTVEGVTGNLFDAYLKPY 142
Score = 110 bits (265), Expect = 1e-24
Identities = 56/114 (49%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Frame = +2
Query: 494 LEAVLMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*XR 673
L+ +EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+K R
Sbjct: 139 LKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVK---R 195
Query: 674 RGSTKCCRAMMTS-GGCRKQLAPNLREMVELPLRHPSLVQXYLELKLPTXAFLH 832
+ GG RKQ+A +RE+VELPLRHP L + + +K P L+
Sbjct: 196 EDEERLDEVGYDDVGGVRKQMA-QIRELVELPLRHPQLFKS-IGVKPPKGILLY 247
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = +1
Query: 103 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRG
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRG 58
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 118 bits (284), Expect = 5e-27
Identities = 50/84 (59%), Positives = 63/84 (75%)
Frame = +3
Query: 255 DTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
DT+L+KGK+RK+TVCI L+D+ C + KIRM DV+S+ CP VKYGKRV
Sbjct: 59 DTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRV 118
Query: 435 HILPIDDSVEGLTGNLFEVYLKPY 506
HILP+DD+VEG+TGNLF+ YLKPY
Sbjct: 119 HILPVDDTVEGVTGNLFDAYLKPY 142
Score = 109 bits (263), Expect = 2e-24
Identities = 56/114 (49%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Frame = +2
Query: 494 LEAVLMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*XR 673
L+ +EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+K R
Sbjct: 139 LKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVK---R 195
Query: 674 RGSTKCCRAMMTS-GGCRKQLAPNLREMVELPLRHPSLVQXYLELKLPTXAFLH 832
+ GG RKQ+A +RE+VELPLRHP L + + +K P L+
Sbjct: 196 EDEERLDDVGYDDVGGVRKQMA-QIRELVELPLRHPQLFKS-IGVKPPKGILLY 247
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/51 (66%), Positives = 42/51 (82%)
Frame = +1
Query: 103 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRG
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRG 58
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 113 bits (271), Expect = 2e-25
Identities = 46/84 (54%), Positives = 62/84 (73%)
Frame = +3
Query: 255 DTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRV 434
DT+L+KGK+RK+TVCI L+D+ C + KIRM DV+S+ CP VKYG RV
Sbjct: 60 DTILIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRV 119
Query: 435 HILPIDDSVEGLTGNLFEVYLKPY 506
HILP+DD++EG++GN+F+ YLKPY
Sbjct: 120 HILPLDDTIEGVSGNIFDAYLKPY 143
Score = 110 bits (265), Expect = 1e-24
Identities = 56/114 (49%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Frame = +2
Query: 494 LEAVLMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*XR 673
L+ +EAYRP+ + D F+VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPIK R
Sbjct: 140 LKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIK---R 196
Query: 674 RGSTKCCRAMMTS-GGCRKQLAPNLREMVELPLRHPSLVQXYLELKLPTXAFLH 832
+ GG RKQ+A +RE+VELPLRHP L + + +K P L+
Sbjct: 197 EDEERLDEVGYDDVGGVRKQMA-QIRELVELPLRHPQLFKS-IGVKPPKGILLY 248
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/52 (57%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = +1
Query: 103 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRG 255
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRG
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRG 59
>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from [Nicotiana tabacum]
Length = 1007
Score = 31.1 bits (67), Expect = 0.98
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 402 PCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSAG 560
P P + GK L + G++G L E L YL +LTV S +P+ S G
Sbjct: 678 PSPELPLGKTAADLAYANGHRGISGFLAESSLTSYLEKLTVDSKENSPANSCG 730
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2
Query: 713 GGCRKQLAPNLREMVELPLRHP 778
GGC++Q+ +RE+VELP+ HP
Sbjct: 208 GGCKEQIE-KIREVVELPMLHP 228
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2
Query: 713 GGCRKQLAPNLREMVELPLRHP 778
GGC++Q+ +RE+VELP+ HP
Sbjct: 171 GGCKEQIE-KMREVVELPMLHP 191
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 410 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 315
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At4g23950.1 68417.m03444 expressed protein ; expression supported
by MPSS
Length = 466
Score = 28.7 bits (61), Expect = 5.2
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Frame = -1
Query: 603 DGSVSTTLNSTARM-PPRTMKVSSRWIGR*ASISTASSILRIDCQ*DPQLNHQLAVCGLV 427
DGSVS TLNST+ + P T K ++ + R + D +N+ L +C +V
Sbjct: 41 DGSVSKTLNSTSSVFPQATEKENNFCLLRKGQLQ--------DVYEHVLVNNALLICKVV 92
Query: 426 F---HISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQG-NYRL 310
IS K E P + + +GSS+ + G YRL
Sbjct: 93 LPERRISKKTLEARDPRYVNLEDKSLKVNGSSQLVNNGTRYRL 135
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -1
Query: 252 TEELKLLHFGL*KCHD*VVIAD 187
TEELK+ H+ L KC D +V+A+
Sbjct: 4 TEELKISHYKLYKCFDFLVVAN 25
>At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1050
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 476 QSIRSILEAVLMEAYRPIHRDDT-FMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGE 652
Q++ + + + + RPI DD F + A+ V E +P I+A +I D +
Sbjct: 121 QNLLEVNDLIAVTDKRPIRIDDLRFSHEPYLLALVCGVNENNPHLITILASKPIIFDDDD 180
Query: 653 PIKT*XRRG 679
IKT +RG
Sbjct: 181 DIKTSSKRG 189
>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from[Nicotiana tabacum]
Length = 1050
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 402 PCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYLWRLTVRSIVTTPSWSAGACA 569
P P GK L + G++G L E L YL +LTV + + + S+GA A
Sbjct: 727 PSPEHPLGKTAADLAYGNGHRGISGFLAESSLTSYLEKLTVDAKENSSADSSGAKA 782
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -1
Query: 459 LNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCK---RF 289
L++ CG H S D + I + H F+QH + + G R R+ C+ +
Sbjct: 262 LSYMCLQCGFAVHCSCVDLPQVININRHDHRISFTQHLGPGYLNCGVCR-RSVCQFNGAY 320
Query: 288 PCGVCP 271
C VCP
Sbjct: 321 SCLVCP 326
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 713 GGCRKQLAPNLREMVELPLRHPSLVQXYLELKLPTXAFLH 832
GG Q+ ++E VELPL HP L + + +K P L+
Sbjct: 191 GGLEAQIQ-EIKEAVELPLTHPELYED-IGIKPPKGVILY 228
>At3g10980.1 68416.m01325 expressed protein
Length = 557
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 803 TPNTXEPVKDDAVAIPPSPLNL 738
TP E VK D PPSPL++
Sbjct: 532 TPREKEEVKSDVALTPPSPLSI 553
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 713 GGCRKQLAPNLREMVELPLRHPSLVQXYLELKLPTXAFLH 832
GG Q+ ++E VELPL HP L + + +K P L+
Sbjct: 191 GGLEAQIQ-EIKEAVELPLTHPELYED-IGIKPPKGVILY 228
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,602,014
Number of Sequences: 28952
Number of extensions: 412170
Number of successful extensions: 1111
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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