Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0520
         (852 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7NYB6 Cluster: Probable methyl-accepting chemotaxis pr...    33   9.1  

>UniRef50_Q7NYB6 Cluster: Probable methyl-accepting chemotaxis
           protein IV; n=1; Chromobacterium violaceum|Rep: Probable
           methyl-accepting chemotaxis protein IV - Chromobacterium
           violaceum
          Length = 599

 Score = 33.1 bits (72), Expect = 9.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 206 RTKLVQRKVF*WWPLKEEICGFFFVRMWSILVVNYSIY 319
           R   V  K F W  L +++C FFF+ ++ +L+V YS +
Sbjct: 6   RLYTVSEKTF-WNTLSKKLCSFFFISLFQLLMVAYSYH 42


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,954,050
Number of Sequences: 1657284
Number of extensions: 13958771
Number of successful extensions: 22643
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 22152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22639
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75013275813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)