Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0518
(381 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 56 2e-09
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 47 1e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 45 5e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 39 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 39 3e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 38 7e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.002
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.002
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.003
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 35 0.005
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 32 0.026
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.081
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.081
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 29 0.19
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.33
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.57
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 27 0.99
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 25 3.0
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 25 4.0
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 25 4.0
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.3
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 56.0 bits (129), Expect = 2e-09
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +1
Query: 109 TTDNQLNGNAENGGGDSQDHNSAXXPGR---DDDRCXXXXXXXXXXEDAMXTFVGGLSWE 279
T DN +G EN D+ + N + G + + ED F+GGL+WE
Sbjct: 117 TWDNAEDG--ENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKM-FIGGLNWE 173
Query: 280 TTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
TTD LRD+F +G + V D TGRSRGF
Sbjct: 174 TTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGF 206
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
E FVGG+ + T++ R+ F +G + + D +TGR RGF
Sbjct: 244 EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGF 290
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 46.8 bits (106), Expect = 1e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
E + FVG L +ETTD L++HFG G I + + T +TG+ +GF
Sbjct: 225 EPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGF 271
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 44.8 bits (101), Expect = 5e-06
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
E + FVG LS+ T+ L FG G I+SI + TDP +GR +GF
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGF 409
Score = 41.9 bits (94), Expect = 3e-05
Identities = 24/100 (24%), Positives = 43/100 (43%)
Frame = +1
Query: 79 ANNDNFAQDITTDNQLNGNAENGGGDSQDHNSAXXPGRDDDRCXXXXXXXXXXEDAMXTF 258
+++D+ ++ +D+ + +E+ S+D ++R + F
Sbjct: 210 SSSDSSSESGDSDSSSDSESESS---SEDEKKRKAEPASEERPAKITKPSQDSNETCTVF 266
Query: 259 VGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
VG LSW D+ L F YG I V D +GRS+G+
Sbjct: 267 VGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGY 306
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 39.1 bits (87), Expect = 2e-04
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
DA +VG + + T + L+ HF + G + + + D TG +GFA
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFA 99
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 38.7 bits (86), Expect = 3e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+D+ V LS +T ++ LRD F +G I+ + + D TGR++GFA
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFA 246
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 37.5 bits (83), Expect = 7e-04
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVG L++E ++ L +FG G I+ + + DP T +GFA
Sbjct: 273 FVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFA 314
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.3 bits (80), Expect = 0.002
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +1
Query: 121 QLNGNAENGGGDSQDHNSAXXPGRDDDRCXXXXXXXXXXEDAMXTFVGGLSWETTDKXLR 300
+L G +E G + D + D + ED + FV L +E T++ L
Sbjct: 237 ELAGESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNEGLEDTV--FVRNLLFECTEQELY 294
Query: 301 DHFGAYGXIESIXVXTDPNTGRSRG 375
+HF +G + + DP T RS G
Sbjct: 295 NHFRQFGPLAYAKLVKDPATDRSLG 319
Score = 33.5 bits (73), Expect = 0.011
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV L+++T L + F G I+ V T+P TG +RG+
Sbjct: 8 FVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGY 48
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.9 bits (79), Expect = 0.002
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+VG L W T+D+ L D F G + + +P TGRS+GF
Sbjct: 283 YVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGF 322
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 35.9 bits (79), Expect = 0.002
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVG L +++ + L+ HF G + S+ + TD +GR +G+A
Sbjct: 95 FVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYA 136
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 35.5 bits (78), Expect = 0.003
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
E VG LS++ T+ L D FG + SI + DP T RSRGF
Sbjct: 91 EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGF 135
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 34.7 bits (76), Expect = 0.005
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
F+ LS++T + + F YG IE I V + TG+S G+A
Sbjct: 103 FLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYA 144
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 32.3 bits (70), Expect = 0.026
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG + ++ +++ + + F G +++ + DP TG +G+
Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGY 50
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 30.7 bits (66), Expect = 0.081
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
D+ ++G L ++ + + F +G I + D TG+S+GFA
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFA 75
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 30.7 bits (66), Expect = 0.081
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+VG + +E ++ + D F G ++S + DP +G+ +G+
Sbjct: 8 YVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGY 48
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.5 bits (63), Expect = 0.19
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+VG L T+ L + F + G + SI V D T RS G+A
Sbjct: 83 YVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYA 124
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 0.33
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
D FV L+ T + L D F G + + D +GRS+G A
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVA 284
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.9 bits (59), Expect = 0.57
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESI 336
+++ +VG + +D+ + HF YG +ESI
Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 25.0 bits (52), Expect = 4.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 280 TTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
T L D F +G I S + PN+G S+G+
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGY 427
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 0.99
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGA-YGXIESIXVXTDPNTGRSRGF 378
FVG LS + + F + Y +S + TDP T SRG+
Sbjct: 189 FVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGY 230
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 3.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG L ++ L D F A G + GRS+G+
Sbjct: 102 FVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGY 142
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 4.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESI 336
F+ G+ E D +R HF YG ++S+
Sbjct: 215 FLIGVEDELADYKIRKHFEQYGPLKSV 241
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 4.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+VG LS+ TT++ + F G I I + D T GF
Sbjct: 35 YVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGF 75
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 24.6 bits (51), Expect = 5.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 301 HGAPYLWSPSSAHQQKXSWR 242
H A Y SPSS H + SWR
Sbjct: 20 HYATYRVSPSSLHIRLSSWR 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,017
Number of Sequences: 5004
Number of extensions: 19314
Number of successful extensions: 58
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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