Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0518
(381 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 56 1e-08
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 56 1e-08
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 49 1e-06
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 48 3e-06
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 48 3e-06
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 48 3e-06
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 47 5e-06
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 47 5e-06
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 47 5e-06
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 43 6e-05
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 43 6e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 39 0.001
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 38 0.002
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 38 0.002
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 38 0.002
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 37 0.006
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 36 0.010
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 36 0.010
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 36 0.010
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.010
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.023
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.023
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.052
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 33 0.069
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 33 0.069
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 33 0.069
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 33 0.091
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 32 0.12
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 32 0.12
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 32 0.12
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 32 0.16
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 32 0.16
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 31 0.21
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 31 0.21
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 0.21
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 0.21
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 31 0.28
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 30 0.49
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 30 0.49
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 30 0.64
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 30 0.64
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 27 3.4
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 27 3.4
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 27 3.4
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 27 3.4
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 27 3.4
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 27 3.4
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 27 3.4
AF099920-4|AAK29844.2| 363|Caenorhabditis elegans Serpentine re... 27 3.4
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 27 6.0
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 27 6.0
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 27 6.0
AC006608-5|ABC71834.1| 311|Caenorhabditis elegans Hypothetical ... 27 6.0
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 27 6.0
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 55.6 bits (128), Expect = 1e-08
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+D F+GGLSW+TT + LRD+FG +G + V DP T R+RGF
Sbjct: 42 QDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGF 88
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGLS +T + ++ +F YG +E + D T R RGF
Sbjct: 137 FIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGF 177
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 55.6 bits (128), Expect = 1e-08
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+D F+GGLSW+TT + LRD+FG +G + V DP T R+RGF
Sbjct: 42 QDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGF 88
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGLS +T + ++ +F YG +E + D T R RGF
Sbjct: 137 FIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGF 177
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 49.2 bits (112), Expect = 1e-06
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +1
Query: 241 DAMXT--FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
D M T FVGGL + T+DK L ++F +G IE V TD NT +SRG+
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGY 78
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 47.6 bits (108), Expect = 3e-06
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
E+ FVGGL+ TTD +R+ + +G I I V DP T RSRGF
Sbjct: 20 ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGF 66
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V G+ + T+ L ++F YG + + D T + RGF
Sbjct: 117 YVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGF 157
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 47.6 bits (108), Expect = 3e-06
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
E+ FVGGL+ TTD +R+ + +G I I V DP T RSRGF
Sbjct: 20 ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGF 66
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V G+ + T+ L ++F YG + + D T + RGF
Sbjct: 117 YVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGF 157
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 47.6 bits (108), Expect = 3e-06
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
E+ FVGGL+ TTD +R+ + +G I I V DP T RSRGF
Sbjct: 20 ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGF 66
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V G+ + T+ L ++F YG + + D T + RGF
Sbjct: 117 YVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGF 157
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 46.8 bits (106), Expect = 5e-06
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGLS +TTD+ L ++F +G + V DPNT SRGF
Sbjct: 52 FIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGF 92
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 46.8 bits (106), Expect = 5e-06
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGLS +TTD+ L ++F +G + V DPNT SRGF
Sbjct: 72 FIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGF 112
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 46.8 bits (106), Expect = 5e-06
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGLS +TTD+ L ++F +G + V DPNT SRGF
Sbjct: 73 FIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGF 113
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 43.2 bits (97), Expect = 6e-05
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVGG+S E ++ L HF YG + V D GRSRGFA
Sbjct: 32 FVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFA 73
Score = 34.7 bits (76), Expect = 0.023
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVGGL + +++ LR HF +G ++ I D T R FA
Sbjct: 113 FVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 43.2 bits (97), Expect = 6e-05
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVGG+S E ++ L HF YG + V D GRSRGFA
Sbjct: 32 FVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFA 73
Score = 34.7 bits (76), Expect = 0.023
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVGGL + +++ LR HF +G ++ I D T R FA
Sbjct: 113 FVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+VG ++TT++ L + F + G I ++ + D TGR RGFA
Sbjct: 8 YVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFA 49
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+D+ ++GGLS+ ++ + F YG + +I + D +TG+S+GFA
Sbjct: 35 KDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFA 82
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+VG + ++ T++ + ++F A G + ++ + D TGR RGFA
Sbjct: 9 YVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFA 50
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+VG ++TT+ L ++F G + ++ + D TGR RGFA
Sbjct: 7 YVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFA 48
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 268 LSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+ W T L +F YG I+S+ + DP+TG RGFA
Sbjct: 32 VKWVTGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFA 69
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V + + D LRDHF ++G I S V D N GRS+GF
Sbjct: 346 YVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGF 385
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V + + D LRDHF ++G I S V D N GRS+GF
Sbjct: 346 YVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGF 385
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 238 EDAMXT-FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
ED T FVG +++ET++ LR F AYG I+ + + D G+ RG+A
Sbjct: 100 EDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHD-EAGKPRGYA 147
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
DA +VG + W++T + +HF G + + + D TG + FA
Sbjct: 44 DARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFA 90
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 37.5 bits (83), Expect = 0.003
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 247 MXTFVGGLSWETTDKXLRDHFGAY-GXIESIXVXTDPNTGRSRGFA 381
M FVG L +E T+ L F A G +E++ + D +TG+ +GFA
Sbjct: 246 MAIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFA 291
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 36.7 bits (81), Expect = 0.006
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +1
Query: 259 VGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
V LS TT+K LRD FG +G I + D +G SRGF
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGF 119
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 35.9 bits (79), Expect = 0.010
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS E ++ LR+ F +G + V D NT +S+G+
Sbjct: 25 FVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 65
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 35.9 bits (79), Expect = 0.010
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS E ++ LR+ F +G + V D NT +S+G+
Sbjct: 35 FVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 75
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 35.9 bits (79), Expect = 0.010
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS E ++ LR+ F +G + V D NT +S+G+
Sbjct: 138 FVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 178
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.010
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS E ++ LR+ F +G + V D NT +S+G+
Sbjct: 106 FVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 146
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.7 bits (76), Expect = 0.023
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESI-XVXTDPNTGRSRGFA 381
FVG L E +K L D F A+G I + + D ++G S+GFA
Sbjct: 103 FVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFA 145
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.7 bits (76), Expect = 0.023
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESI-XVXTDPNTGRSRGFA 381
FVG L E +K L D F A+G I + + D ++G S+GFA
Sbjct: 113 FVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFA 155
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 33.5 bits (73), Expect = 0.052
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXV 342
D +VG +S +TTD LRD F YG I + +
Sbjct: 235 DNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRI 268
Score = 30.7 bits (66), Expect = 0.37
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS + +++ L+ F +G + V D T +S+G+
Sbjct: 138 FVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGY 178
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 33.1 bits (72), Expect = 0.069
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
DA +VG + + T + + HF G + + + D +G +GFA
Sbjct: 76 DAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFA 122
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 33.1 bits (72), Expect = 0.069
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FV + E T+ + D F YG I++I + D TG +G+A
Sbjct: 58 FVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYA 99
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 33.1 bits (72), Expect = 0.069
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+VGG + + T+K L F +G + +I + D +G+ RGF
Sbjct: 14 YVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGF 54
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 32.7 bits (71), Expect = 0.091
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG +S++ ++ +R F G + SI + D TG+ +G+
Sbjct: 21 FVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGY 61
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 32.3 bits (70), Expect = 0.12
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYG 321
FVGG+ W+ T+ L+D FG +G
Sbjct: 298 FVGGVPWDITEAALKDSFGEFG 319
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 32.3 bits (70), Expect = 0.12
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 277 ETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
+T + L + F A G + + + TD TGRS+G
Sbjct: 35 DTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKG 67
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 32.3 bits (70), Expect = 0.12
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 277 ETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
+T + L + F A G + + + TD TGRS+G
Sbjct: 180 DTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKG 212
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 31.9 bits (69), Expect = 0.16
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 265 GLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
GL WE T++ LRD FG G IES+ + GR+ G A
Sbjct: 11 GLPWEATEQELRDFFGNNG-IESLEIPR--RNGRTSGDA 46
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 31.9 bits (69), Expect = 0.16
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 265 GLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
GL WE T++ LRD FG G IES+ + GR+ G A
Sbjct: 11 GLPWEATEQELRDFFGNNG-IESLEIPR--RNGRTSGDA 46
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 259 VGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+ LS++TT LR F YG I + + D + +S+GF
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGF 62
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 259 VGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+ LS++TT LR F YG I + + D + +S+GF
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGF 62
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.21
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 295 LRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+R+ + +G I I V DP T RSRGF
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGF 28
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V G+ + T+ L ++F YG + + D T + RGF
Sbjct: 79 YVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGF 119
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.5 bits (68), Expect = 0.21
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 295 LRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+R+ + +G I I V DP T RSRGF
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGF 28
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V G+ + T+ L ++F YG + + D T + RGF
Sbjct: 79 YVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGF 119
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 31.1 bits (67), Expect = 0.28
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
DA F+G + + +T + + +HF G I + D T + + FA
Sbjct: 53 DAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFA 99
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 30.7 bits (66), Expect = 0.37
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
F+ L + T + L+ F YG + + V D TG +GFA
Sbjct: 282 FLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFA 323
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 30.3 bits (65), Expect = 0.49
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 259 VGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
V L E + LRD FG G + I + D TG +GFA
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFA 220
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 30.3 bits (65), Expect = 0.49
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
DA F+G + + +T + + +HF G I + D T + + FA
Sbjct: 59 DAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFA 105
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 29.9 bits (64), Expect = 0.64
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGG TT+ LR+HF + ++ + + + G+S+G+
Sbjct: 69 FVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD-GQSKGY 108
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 29.9 bits (64), Expect = 0.64
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGG TT+ LR+HF + ++ + + + G+S+G+
Sbjct: 70 FVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD-GQSKGY 109
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
DA+ FVG + + + R F YG + S + D +T S+G
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
DA+ FVG + + + R F YG + S + D +T S+G
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
DA+ FVG + + + R F YG + S + D +T S+G
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
DA+ FVG + + + R F YG + S + D +T S+G
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
DA+ FVG + + + R F YG + S + D +T S+G
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
DA+ FVG + + + R F YG + S + D +T S+G
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
DA+ FVG + + + R F YG + S + D +T S+G
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>AF099920-4|AAK29844.2| 363|Caenorhabditis elegans Serpentine
receptor, class w protein95 protein.
Length = 363
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 161 CESPPPFSAFPLSWLSVVIS 102
CE P P S F + W++VVI+
Sbjct: 107 CEPPAPLSFFYMYWINVVIN 126
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+VG L + + L + F A G + SI V D T S G+A
Sbjct: 35 YVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+VG L + + L + F A G + SI V D T S G+A
Sbjct: 35 YVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+VG L + + L + F A G + SI V D T S G+A
Sbjct: 35 YVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
>AC006608-5|ABC71834.1| 311|Caenorhabditis elegans Hypothetical
protein C15F1.5b protein.
Length = 311
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 202 CRHRVLGXQHCYDLANHRHRS 140
C H + QHCYDLA+ + +S
Sbjct: 11 CHHDIC--QHCYDLASRKEKS 29
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 202 CRHRVLGXQHCYDLANHRHRS 140
C H + QHCYDLA+ + +S
Sbjct: 81 CHHDIC--QHCYDLASRKEKS 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,636,232
Number of Sequences: 27780
Number of extensions: 121719
Number of successful extensions: 409
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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