Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0518
(381 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 55 1e-08
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 54 4e-08
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 52 2e-07
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 50 4e-07
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 50 4e-07
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 50 4e-07
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 50 4e-07
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 50 5e-07
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 50 5e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 50 5e-07
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 50 5e-07
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 49 9e-07
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 49 1e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 48 2e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 48 2e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 48 2e-06
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 48 2e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 48 3e-06
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 47 4e-06
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 47 4e-06
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 47 4e-06
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 47 4e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 47 5e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 47 5e-06
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 46 6e-06
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 46 6e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 46 9e-06
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 46 9e-06
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 46 9e-06
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 46 9e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 45 1e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 45 1e-05
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 44 3e-05
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 44 3e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 44 3e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 44 5e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 44 5e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 44 5e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 44 5e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 44 5e-05
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 43 8e-05
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 43 8e-05
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 43 8e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 42 1e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 42 1e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 1e-04
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 42 1e-04
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 42 2e-04
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 42 2e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 41 2e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 41 3e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 40 4e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 40 6e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 40 6e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 40 7e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 40 7e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 39 0.001
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 39 0.001
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 39 0.001
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 39 0.001
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 39 0.001
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 39 0.001
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 39 0.001
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 39 0.001
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 38 0.002
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 38 0.002
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 38 0.002
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 38 0.002
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 38 0.002
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 38 0.002
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 38 0.003
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 38 0.003
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 37 0.004
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 37 0.004
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 37 0.004
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 37 0.004
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 37 0.004
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 37 0.005
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 37 0.005
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 37 0.005
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 36 0.007
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 36 0.007
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 36 0.007
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 36 0.007
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 36 0.009
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 36 0.009
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 36 0.012
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 36 0.012
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 36 0.012
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 35 0.016
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 35 0.016
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 35 0.016
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 35 0.021
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 35 0.021
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 35 0.021
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 35 0.021
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 35 0.021
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 35 0.021
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 35 0.021
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 35 0.021
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 35 0.021
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 34 0.028
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 34 0.028
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 34 0.037
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 34 0.037
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 34 0.037
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 34 0.037
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 34 0.037
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.037
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.049
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 33 0.049
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 33 0.064
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 33 0.085
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 33 0.085
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 33 0.085
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 32 0.11
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 32 0.11
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 32 0.11
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 32 0.15
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 32 0.15
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 32 0.15
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 32 0.15
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 32 0.15
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 31 0.20
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 31 0.26
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 31 0.34
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 30 0.45
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 30 0.45
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 0.79
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 29 0.79
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 0.79
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 29 1.0
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 1.0
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 29 1.4
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 29 1.4
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 29 1.4
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 29 1.4
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 1.4
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 29 1.4
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 29 1.4
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 28 1.8
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 28 2.4
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 28 2.4
At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family... 27 3.2
At2g15520.1 68415.m01776 zinc finger protein, putative strong si... 27 3.2
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 27 5.6
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 27 5.6
At1g09810.1 68414.m01101 expressed protein contains Pfam profile... 27 5.6
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 26 9.7
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 26 9.7
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 55.2 bits (127), Expect = 1e-08
Identities = 24/41 (58%), Positives = 28/41 (68%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+WET + LR HF YG I V TD NTGRS+G+
Sbjct: 27 FVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGY 67
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 53.6 bits (123), Expect = 4e-08
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+WET + LR HF YG I V D NTGRS+G+
Sbjct: 27 FVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGY 67
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGG+SWET + LR+HF YG + V D TGR RGF
Sbjct: 9 FVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGF 49
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL TD+ R +F YG + + + D T R RGF
Sbjct: 113 FVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGF 153
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 50.4 bits (115), Expect = 4e-07
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GG+SW+T ++ LRD+F YG + + D TGR+RGF
Sbjct: 9 FIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGF 49
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL T++ +++F +G I + V D NT R RGF
Sbjct: 113 FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGF 153
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 50.4 bits (115), Expect = 4e-07
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GG+SW+T ++ LRD+F YG + + D TGR+RGF
Sbjct: 9 FIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGF 49
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL T++ +++F +G I + V D NT R RGF
Sbjct: 113 FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGF 153
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 50.4 bits (115), Expect = 4e-07
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GG+SW+T ++ LRD+F YG + + D TGR+RGF
Sbjct: 9 FIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGF 49
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL T++ +++F +G I + V D NT R RGF
Sbjct: 113 FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGF 153
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 50.4 bits (115), Expect = 4e-07
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GG+SW+T ++ L+++FG YG + + D TGR+RGF
Sbjct: 18 FIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGF 58
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL T+ +++F +G I + V D NT R RGF
Sbjct: 125 FVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGF 165
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 50.0 bits (114), Expect = 5e-07
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GG+SWET++ LRD+F ++G + + D TGR+RGF
Sbjct: 9 FIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGF 49
Score = 35.9 bits (79), Expect = 0.009
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+ T+ + +F +G I + V D T R RGF
Sbjct: 109 FVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGF 149
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 50.0 bits (114), Expect = 5e-07
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GG+SWET++ LRD+F ++G + + D TGR+RGF
Sbjct: 9 FIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGF 49
Score = 35.9 bits (79), Expect = 0.009
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+ T+ + +F +G I + V D T R RGF
Sbjct: 109 FVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGF 149
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 50.0 bits (114), Expect = 5e-07
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGLSW T D LRD F +G + V D TGRSRGF
Sbjct: 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGF 78
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 50.0 bits (114), Expect = 5e-07
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGLSW T D LRD F +G + V D TGRSRGF
Sbjct: 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGF 78
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 49.2 bits (112), Expect = 9e-07
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGL+W T+D+ LRD F YG + V D +GRSRGF
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGF 50
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 48.8 bits (111), Expect = 1e-06
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+WET +R +F +G I V TD NTGRS+G+
Sbjct: 25 FVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGY 65
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGLSW T D L+ F ++G + V D TGRSRGF
Sbjct: 38 FVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGF 78
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGLSW T D L+ F ++G + V D TGRSRGF
Sbjct: 38 FVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGF 78
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 48.0 bits (109), Expect = 2e-06
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GG+SW+T ++ L+++F ++G + + D TGR+RGF
Sbjct: 9 FIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGF 49
Score = 35.1 bits (77), Expect = 0.016
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL T+ + +F +G + V D NT R RGF
Sbjct: 111 FVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGF 151
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 48.0 bits (109), Expect = 2e-06
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GG+SW+T ++ L+++F ++G + + D TGR+RGF
Sbjct: 9 FIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGF 49
Score = 35.1 bits (77), Expect = 0.016
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL T+ + +F +G + V D NT R RGF
Sbjct: 111 FVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGF 151
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 47.6 bits (108), Expect = 3e-06
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGLSW ++ L+D F ++G + + + D +GRSRGF
Sbjct: 44 FIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGF 84
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 47.2 bits (107), Expect = 4e-06
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+WET +R +F +G I + TD NTG+S+G+
Sbjct: 20 FVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 47.2 bits (107), Expect = 4e-06
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+WET +R +F +G I + TD NTG+S+G+
Sbjct: 20 FVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 47.2 bits (107), Expect = 4e-06
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 238 EDAMXT--FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
ED T FVGGL+WET LR++F +G I V TD ++GRS+G+
Sbjct: 2 EDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGY 50
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 47.2 bits (107), Expect = 4e-06
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 238 EDAMXT--FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
ED T FVGGL+WET LR++F +G I V TD ++GRS+G+
Sbjct: 2 EDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGY 50
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 46.8 bits (106), Expect = 5e-06
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+W T D+ L F YG + + D TGRSRGF
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGF 51
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 46.8 bits (106), Expect = 5e-06
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+W T D+ L F YG + + D TGRSRGF
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGF 51
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 46.4 bits (105), Expect = 6e-06
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GG+SW+T + LR++F +G + + V + TGR RGF
Sbjct: 9 FIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGF 49
Score = 33.9 bits (74), Expect = 0.037
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL T R +F YG + + D T R RGF
Sbjct: 113 FVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGF 153
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 46.4 bits (105), Expect = 6e-06
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGG+SWETT + ++FG +G + + TD TG RGF
Sbjct: 69 FVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGF 109
Score = 35.9 bits (79), Expect = 0.009
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL + L+++F YG I + D +TGRSRGF
Sbjct: 160 FVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGF 200
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 46.0 bits (104), Expect = 9e-06
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVGG+S+ T + LR+ F YG + + D TGRSRGFA
Sbjct: 37 FVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFA 78
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 46.0 bits (104), Expect = 9e-06
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+WET + ++ HF +G I V TD +GRS+G+
Sbjct: 16 FVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGY 56
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 46.0 bits (104), Expect = 9e-06
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+WET + ++ HF +G I V TD +GRS+G+
Sbjct: 16 FVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGY 56
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 46.0 bits (104), Expect = 9e-06
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+WET + ++ HF +G I V TD +GRS+G+
Sbjct: 16 FVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGY 56
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGLSW+ T++ L F YG I + +TGR RGF
Sbjct: 15 FVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGF 55
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGLSW+ T++ L F YG I + +TGR RGF
Sbjct: 15 FVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGF 55
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 44.4 bits (100), Expect = 3e-05
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+WET +R +F +G I + TD TG+S+G+
Sbjct: 20 FVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGY 60
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/47 (44%), Positives = 25/47 (53%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+ A FVGGL+ ETT HFG YG I + D TG+ RGF
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGF 85
Score = 35.5 bits (78), Expect = 0.012
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGG+ D ++ F +G ++ + D +TGRSRGF
Sbjct: 133 FVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGF 173
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV G W+TT + L+ F +YG IE V D +TGR +G+
Sbjct: 411 FVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGY 451
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 43.6 bits (98), Expect = 5e-05
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+W T D+ L+ F +G + + D +GRSRGF
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGF 49
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 43.6 bits (98), Expect = 5e-05
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+W T D+ L+ F +G + + D +GRSRGF
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGF 49
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 43.6 bits (98), Expect = 5e-05
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+W T D+ L+ F +G + + D +GRSRGF
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGF 49
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 43.6 bits (98), Expect = 5e-05
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+W T D+ L+ F +G + + D +GRSRGF
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGF 49
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 43.6 bits (98), Expect = 5e-05
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV GL W+TT + L+ F YG I V D +TGR++GF
Sbjct: 166 FVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGF 206
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 42.7 bits (96), Expect = 8e-05
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+W+T + + DHF YG I + +D T RS+G+
Sbjct: 20 FVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 60
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 42.7 bits (96), Expect = 8e-05
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGL +TT+ HFG YG I + D +TG+ RGF
Sbjct: 22 FIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGF 62
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGG+ T+ L+D F YG + V D T RSRGF
Sbjct: 112 FVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGF 152
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 42.7 bits (96), Expect = 8e-05
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GGL +TT+ HFG YG I + D +TG+ RGF
Sbjct: 22 FIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGF 62
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGG+ T+ L+D F YG + V D T RSRGF
Sbjct: 112 FVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGF 152
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 42.3 bits (95), Expect = 1e-04
Identities = 21/48 (43%), Positives = 25/48 (52%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
E +VG L W T LR+HF +G I S V D TGR+R FA
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFA 256
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 295 LRDHFGAYGXIESIXVXTDPNTGRSRG 375
L D F +G + S+ V +P TG SRG
Sbjct: 124 LLDMFQPFGTVISVEVSRNPQTGESRG 150
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGLS E TD+ L F +G I + + +TGRSRGF
Sbjct: 10 FVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGF 50
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 41.9 bits (94), Expect = 1e-04
Identities = 24/86 (27%), Positives = 34/86 (39%)
Frame = +1
Query: 124 LNGNAENGGGDSQDHNSAXXPGRDDDRCXXXXXXXXXXEDAMXTFVGGLSWETTDKXLRD 303
++G+ E GG D A D D FV L + T++ L +
Sbjct: 220 IDGDVEAGGVGKDDDGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELME 279
Query: 304 HFGAYGXIESIXVXTDPNTGRSRGFA 381
HF +G I + + D T RSRG A
Sbjct: 280 HFSTFGKISEVHLVLDKETKRSRGIA 305
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV GLS TT++ L+D F ++G + V TD ++GRS+GF
Sbjct: 37 FVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGF 77
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV GL WETT + L F YG IE V D TG+++GF
Sbjct: 107 FVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGF 147
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV GL WETT + L F YG IE V D TG+++GF
Sbjct: 107 FVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGF 147
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +1
Query: 244 AMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
A +VG LS TTD LR+ F YG + V D T RSRGF
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGF 46
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 40.7 bits (91), Expect = 3e-04
Identities = 21/41 (51%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS E TD L D F A+ V D TGRSRGF
Sbjct: 151 FVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGF 191
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+GG+++ + LR+ F YG + V D TGRSRGF
Sbjct: 43 FIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 83
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 39.9 bits (89), Expect = 6e-04
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+W T ++ + F +G + + D TGRS+GF
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGF 87
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 39.9 bits (89), Expect = 6e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
D FVGG++ ET+++ L+ +F YG + V + TG+ RGF
Sbjct: 4 DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGF 49
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGLS TT++ + +F +G + V D T R RGF
Sbjct: 123 FVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGF 163
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 39.5 bits (88), Expect = 7e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+ GL+ +TT + LR F +YG +E V D TG+S+G+
Sbjct: 78 FIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGY 118
Score = 34.3 bits (75), Expect = 0.028
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+V + ++ L +HF AYG +E + D TG+SRGFA
Sbjct: 170 YVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFA 211
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 39.5 bits (88), Expect = 7e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+ GL+ +TT + LR F +YG +E V D TG+S+G+
Sbjct: 78 FIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGY 118
Score = 34.3 bits (75), Expect = 0.028
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+V + ++ L +HF AYG +E + D TG+SRGFA
Sbjct: 170 YVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFA 211
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+V GLS TDK L HF G + S + +P T SRGFA
Sbjct: 75 YVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFA 116
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+V GLS TDK L HF G + S + +P T SRGFA
Sbjct: 74 YVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFA 115
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
E A +VG L W+ + L F +G + V D TGRSRGF
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 287
Score = 29.5 bits (63), Expect = 0.79
Identities = 21/94 (22%), Positives = 37/94 (39%)
Frame = +1
Query: 97 AQDITTDNQLNGNAENGGGDSQDHNSAXXPGRDDDRCXXXXXXXXXXEDAMXTFVGGLSW 276
+QD++ ++ G+A G D + G + + FVG L++
Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESE----GDVSEGAVSERAEFPEPSEEAKLFVGNLAY 159
Query: 277 ETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+ + L F G +E V + T +SRGF
Sbjct: 160 DVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGF 193
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V GLS T++ L DHF G + + + DP T SRGF
Sbjct: 48 YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGF 88
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V GLS T++ L DHF G + + + DP T SRGF
Sbjct: 78 YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGF 118
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 265 GLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
G+ W+ L+D+ +G +E V D +TGRSRGF
Sbjct: 9 GIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGF 46
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG L E + LRD+FG +G I+ + DP RGF
Sbjct: 243 FVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGF 283
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
FV + ++ R HF YG I + + D N+ + RG
Sbjct: 94 FVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRG 133
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+ G L W T + L+D FG + V + NTGRSRGF
Sbjct: 222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGF 262
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+VG L + T L FG G + + + D T RSRGF
Sbjct: 119 YVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGF 159
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGLS T + L++ FG++G I V D +G SRGF
Sbjct: 39 FVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGF 79
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG L+W TT LR +F +G + V ++ GRS+G+
Sbjct: 15 FVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGY 55
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIES-IXVXTDPNTGRSRGF 378
F+G L + +K L D F A+G I S + DP+TG SRGF
Sbjct: 115 FIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGF 156
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
E + FV GLS TT + LR F +G + V TD +G S+GF
Sbjct: 53 EPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGF 99
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGA-YGXIESIXVXTDPNTGRSRGF 378
FVG L+ + TD L++ F Y + V TDP+TGRS+G+
Sbjct: 119 FVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGY 160
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+++ +VGG+ ++ T+ L F YG I + + D TG+S+GFA
Sbjct: 33 KNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFA 80
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LSW T + L F G + V D +TGRSRG+
Sbjct: 180 FVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGY 220
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+VG L + ++ LR F A+G +E + + DP TG+ +GF
Sbjct: 268 YVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGF 308
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 37.5 bits (83), Expect = 0.003
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
F L + K LR HF G + + V TD TG SRGFA
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFA 527
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHF-GAYGXIESIXVXTDPNTGRSRGF 378
FVG L+ E TD L D F YG ++ V D TGRS+G+
Sbjct: 157 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGY 198
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 244 AMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
A +VG L W+ L F +G + V +D TGRSRGF
Sbjct: 206 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGF 250
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG L ++ + L F G +E V + +T +SRGF
Sbjct: 116 FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGF 156
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 37.1 bits (82), Expect = 0.004
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
++GGLS T + L+D F ++ + V T+ TGRSRG+
Sbjct: 34 YIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGY 74
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 247 MXTFVGGLSWETTDKXLRDHFG-AYGXIESIXVXTDPNTGRSRGF 378
+ FVG LS + TD L + F Y ++S V D NTGRS+G+
Sbjct: 202 LSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGY 246
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS E TD L F + V D TGRSRGF
Sbjct: 147 FVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGF 187
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 36.7 bits (81), Expect = 0.005
Identities = 21/81 (25%), Positives = 29/81 (35%)
Frame = +1
Query: 136 AENGGGDSQDHNSAXXPGRDDDRCXXXXXXXXXXEDAMXTFVGGLSWETTDKXLRDHFGA 315
+E GGG + G +VG LSW D L + F
Sbjct: 212 SERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNE 271
Query: 316 YGXIESIXVXTDPNTGRSRGF 378
G + V D ++GRS+GF
Sbjct: 272 QGKVVEARVIYDRDSGRSKGF 292
Score = 35.9 bits (79), Expect = 0.009
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS+ L F + G +E + V D TGRSRGF
Sbjct: 102 FVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 36.7 bits (81), Expect = 0.005
Identities = 21/81 (25%), Positives = 29/81 (35%)
Frame = +1
Query: 136 AENGGGDSQDHNSAXXPGRDDDRCXXXXXXXXXXEDAMXTFVGGLSWETTDKXLRDHFGA 315
+E GGG + G +VG LSW D L + F
Sbjct: 220 SERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNE 279
Query: 316 YGXIESIXVXTDPNTGRSRGF 378
G + V D ++GRS+GF
Sbjct: 280 QGKVVEARVIYDRDSGRSKGF 300
Score = 35.9 bits (79), Expect = 0.009
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS+ L F + G +E + V D TGRSRGF
Sbjct: 102 FVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV GL W+T L D F YG IE D +G+S+G+
Sbjct: 131 FVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGY 171
Score = 29.5 bits (63), Expect = 0.79
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+V +S + + L + F +G IE + D TGR +GFA
Sbjct: 230 YVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFA 271
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV GL W+T + L + F YG IE D +G+S+G+
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGY 183
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV GL W+T + L + F YG IE D +G+S+G+
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGY 183
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV GL W+T + L + F YG IE D +G+S+G+
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGY 183
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 36.3 bits (80), Expect = 0.007
Identities = 20/41 (48%), Positives = 20/41 (48%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS E TD L F Y V D TGRSRGF
Sbjct: 142 FVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGF 182
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 35.9 bits (79), Expect = 0.009
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVGGL+ T+ + +F +G I + V D T R RGF
Sbjct: 36 FVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGF 76
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 35.9 bits (79), Expect = 0.009
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG + ++ T++ LR+ G G + S + TD TG+ +G+
Sbjct: 12 FVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGY 52
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 35.5 bits (78), Expect = 0.012
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+VGGL W T + L + F +G I + V D T RS+G+
Sbjct: 16 YVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGY 56
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 35.5 bits (78), Expect = 0.012
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+VG LSW D L F G + V D ++GRS+GF
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247
Score = 33.9 bits (74), Expect = 0.037
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG L + L F + G +E + V D TGRSRGF
Sbjct: 94 FVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 35.5 bits (78), Expect = 0.012
Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIX----VXTDPNTGRSRGF 378
FVG LS E TD L D F A+ S V D TGRSRGF
Sbjct: 151 FVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGF 195
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 35.1 bits (77), Expect = 0.016
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
F+ GLS+ T++K LR F +G + + + D + RS+G+A
Sbjct: 285 FITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 326
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.1 bits (77), Expect = 0.016
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+V GLS+ TT+ LRD F +G + + + D R +GFA
Sbjct: 80 YVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFA 121
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.1 bits (77), Expect = 0.016
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
F LS + LR+HF + G I+++ V D +TG S+G A
Sbjct: 408 FDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIA 449
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 34.7 bits (76), Expect = 0.021
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG L W TTD L YG ++ + + +G+S+G+
Sbjct: 237 FVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGY 277
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 34.7 bits (76), Expect = 0.021
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVGGL + T+ +R+ ++G ++ + D TG S+G+A
Sbjct: 362 FVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYA 403
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 34.7 bits (76), Expect = 0.021
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVGGL + T+ +R+ ++G ++ + D TG S+G+A
Sbjct: 362 FVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYA 403
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 34.7 bits (76), Expect = 0.021
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVGGL + T+ +R+ ++G ++ + D TG S+G+A
Sbjct: 362 FVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYA 403
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 34.7 bits (76), Expect = 0.021
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V L+ TTD L++ FG YG I S V D G+S+GF
Sbjct: 32 YVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGF 71
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 34.7 bits (76), Expect = 0.021
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FV L++E+++ ++ F +YG I+ + + TD T + +G+A
Sbjct: 141 FVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYA 182
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 34.7 bits (76), Expect = 0.021
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG LS TT+ LR+ YG I+++ + TG SRG+
Sbjct: 67 FVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGY 107
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 34.7 bits (76), Expect = 0.021
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGA-YGXIESIXVXTDPNTGRSRGF 378
FVG LS + +D L + F Y +++ V D NTGRS+G+
Sbjct: 200 FVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGY 241
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 34.7 bits (76), Expect = 0.021
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGA-YGXIESIXVXTDPNTGRSRGF 378
FVG LS + +D L + F Y +++ V D NTGRS+G+
Sbjct: 200 FVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGY 241
Score = 30.3 bits (65), Expect = 0.45
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 241 DAMXT--FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTG 363
D M T FVGGL TD+ L+ F +G I S+ + G
Sbjct: 300 DIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCG 342
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 34.3 bits (75), Expect = 0.028
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
+V L TD LR+HF +G I S V DP +G SRG
Sbjct: 330 YVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRG 368
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
F+ L K L + F A+G I S V DP +G+S+G+
Sbjct: 136 FIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGY 175
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 34.3 bits (75), Expect = 0.028
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHF-GAYGXIESIXVXTDPNTGRSRGF 378
FVG L+ + +D L + F G Y ++ V D NTGRS+G+
Sbjct: 216 FVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGY 257
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 33.9 bits (74), Expect = 0.037
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
DA FVG + + T + ++ HF G + + + TD G+ +GFA
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFA 135
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 33.9 bits (74), Expect = 0.037
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTD 351
E +VGGL+ ++ + DHF AYG +ESI V +
Sbjct: 222 ESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 33.9 bits (74), Expect = 0.037
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 244 AMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
A F+GGLS+ TT++ L + F G + + D + RS+GF
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGF 77
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 33.9 bits (74), Expect = 0.037
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FV LS TTD+ LR F +G I+ + D T R +GF
Sbjct: 10 FVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGF 50
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 33.9 bits (74), Expect = 0.037
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVGGL + T+ +R+ ++G + + D TG S+G+A
Sbjct: 378 FVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYA 419
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 33.9 bits (74), Expect = 0.037
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
FVG L W TTD + YG ++ I + +G+S+G+
Sbjct: 205 FVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGY 245
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 33.5 bits (73), Expect = 0.049
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGA-YGXIESIXVXTDPNTGRSRGF 378
FVG L+ + TD L + F A Y ++ V D TGRS+G+
Sbjct: 176 FVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGY 217
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 33.5 bits (73), Expect = 0.049
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTD 351
E +VGGL+ ++ +RD F A+G IESI + D
Sbjct: 225 ESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD 262
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 33.1 bits (72), Expect = 0.064
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGA-YGXIESIXVXTDPNTGRSRGF 378
FVG L+ + +D L + F Y +++ V D NTGRS+G+
Sbjct: 202 FVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGY 243
Score = 29.9 bits (64), Expect = 0.60
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTG 363
FVGGL TD+ L+ F +G I S+ + G
Sbjct: 309 FVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCG 344
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 32.7 bits (71), Expect = 0.085
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNT-GRSRGF 378
+D +VGGL ++ T++ +R F YG + ++ + D + G+ GF
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGF 51
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 32.7 bits (71), Expect = 0.085
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FV G+S+ +T++ L F YG + + V D R +GFA
Sbjct: 24 FVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFA 65
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 32.7 bits (71), Expect = 0.085
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V LS TTD L+ FG YG I S V D G+SR F
Sbjct: 228 YVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCF 267
Score = 32.3 bits (70), Expect = 0.11
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPN-TGRSRGF 378
D + +V L TD+ LR+ F +G I S V DP+ T + GF
Sbjct: 326 DGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGF 372
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+VG L + TD L D+F + S+ V D T S G+
Sbjct: 49 YVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGY 89
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
D V +++ TT L F YG + + + D TG SRGFA
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
D V +++ TT L F YG + + + D TG SRGFA
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 259 VGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
V GLS ++T++ L +G + + V + N+G SRGFA
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V GL W T + L +F +G I V D T RS+GF
Sbjct: 12 YVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGF 52
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.9 bits (69), Expect = 0.15
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
++G L+W+TT++ +R F I S+ + + TG +G+A
Sbjct: 265 YIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYA 305
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.9 bits (69), Expect = 0.15
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+V LS + LR+ FG YG I S V N GRS+GF
Sbjct: 307 YVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGF 346
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+VG LS + T+K L D F + S+ + + TG+S +A
Sbjct: 24 YVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYA 65
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 31.9 bits (69), Expect = 0.15
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
+VG L+ ETT+ L + FG YG I+ I V + SRGFA
Sbjct: 21 WVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFA 56
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.9 bits (69), Expect = 0.15
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTD 351
+VGGL+ ++ +RD F A+G IESI + +
Sbjct: 231 YVGGLNSRVLEQDIRDQFYAHGEIESIRILAE 262
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.5 bits (68), Expect = 0.20
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
D+ +VG + + T + ++ HF + G + + + TD G+ +GFA
Sbjct: 101 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFA 146
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 31.1 bits (67), Expect = 0.26
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FV + + T L HF +G + + TDP TG+ G A
Sbjct: 519 FVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSA 560
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 30.7 bits (66), Expect = 0.34
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
FVG L +++ L+ FG G + + + +P T +S+G A
Sbjct: 217 FVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSA 258
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 30.3 bits (65), Expect = 0.45
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
++G +S+ TT++ L + F G I+ I + D NT GF
Sbjct: 37 YIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGF 77
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 30.3 bits (65), Expect = 0.45
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
F+GGL + ++ LRD G I + + D ++G S+G+A
Sbjct: 119 FIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYA 160
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.5 bits (63), Expect = 0.79
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDP 354
+VG L T++ L D F A+G + S+ V P
Sbjct: 5 YVGNLDPRVTERELEDEFRAFGVVRSVWVARRP 37
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 29.5 bits (63), Expect = 0.79
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 244 AMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
A V L + T++ L+ F A+G I + + D RS+G+A
Sbjct: 39 ASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYA 84
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 0.79
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 85 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAXXPGRDDDR 204
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 82 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 174
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 82 NNDNFAQDITTDNQLNGNAENGGGDS-QDHNSAXXPGRDDD 201
NNDN + DN NGN NG ++ D+N G ++D
Sbjct: 93 NNDNNNGN-NKDNNNNGNNNNGNNNNGNDNNGNNNNGNNND 132
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
FVG + T++ +R +F +G + + + D TG+ +G
Sbjct: 123 FVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQG 162
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
FVG L+ + T+K + + F +G +E + + D +SRG
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRG 252
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
FVG + T++ +R +F +G + + + D TG+ +G
Sbjct: 123 FVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQG 162
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRG 375
FVG L+ + T+K + + F +G +E + + D +SRG
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRG 252
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
DA +VG + + T + ++ HF G + + + D G+ +GFA
Sbjct: 87 DARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFA 132
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 241 DAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
DA +VG + + T + ++ HF G + + + D G+ +GFA
Sbjct: 87 DARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFA 132
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 28.7 bits (61), Expect = 1.4
Identities = 9/42 (21%), Positives = 24/42 (57%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGFA 381
++GG+ + T+ L+ G+ G + + + + ++G +G+A
Sbjct: 95 YLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYA 136
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 238 EDAMXTFVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
E A ++G + T++ L +G +E + V D +GRSR F
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+VG L+ T + L + F G + S V P T +S GF
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGF 220
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDP 354
+VG L T++ L D F ++G I S+ V P
Sbjct: 5 YVGNLDPRVTERELEDEFRSFGVIRSVWVARRP 37
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTG 363
FVGGL TD L++ F YG I + + G
Sbjct: 264 FVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTG 363
FVGGL TD L++ F YG I + + G
Sbjct: 264 FVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 127 NGNAENGG--GDSQDHNSAXXPGRDDDR 204
+GN E G GD D++ PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDP 354
+VG L T++ L D F A+G + ++ V P
Sbjct: 5 YVGNLDPRVTERELEDEFKAFGVLRNVWVARRP 37
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDP 354
+VG L T++ L D F A+G + ++ V P
Sbjct: 5 YVGNLDPRVTERELEDEFKAFGVLRNVWVARRP 37
>At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family
protein
Length = 161
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = -3
Query: 373 LVICXCLDLSXHXYSLXHRMLQNDHGAPYLWSPSSAHQQKXSWRPPXXXXXXXQXHTCRH 194
LV+C D + H+ P +P+ +H Q S +PP Q C+H
Sbjct: 21 LVLCCITDCFSEPATRPHKSPPQTIQTP---TPARSHSQSGSQQPPLIRRKQQQPLACQH 77
Query: 193 RV 188
++
Sbjct: 78 QI 79
>At2g15520.1 68415.m01776 zinc finger protein, putative strong
similarity to zinc finger protein [Arabidopsis thaliana]
GI:976277
Length = 483
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 280 TTDKXLRDHFGAYGXIESIXVXTDPNTGRSR 372
TT L++ +G ++ V DPNTGR R
Sbjct: 238 TTPPILKESDPLFGVLKESQVGVDPNTGRPR 268
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 286 DKXLRDHFGAYGXIESIXV 342
++ +RDHF YG IESI +
Sbjct: 91 EQDIRDHFCPYGEIESIVI 109
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 295 LRDHFGAYGXIESIXVXTDPNTGRSRGF 378
L HF G I + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 428
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 124 LNGNAENGGGDSQDHNSAXXPGRDDD 201
+NGN+ NG D +DHN + D
Sbjct: 113 INGNSNNGFWDQRDHNKKPERNGESD 138
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 259 VGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRSRGF 378
+ L + LRD F +G ++ I + + TG RGF
Sbjct: 51 IRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGF 90
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 256 FVGGLSWETTDKXLRDHFGAYGXIESIXVXTDPNTGRS 369
+VG L T+ L D F + + S+ + D ++GRS
Sbjct: 27 YVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRS 64
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,202,248
Number of Sequences: 28952
Number of extensions: 113085
Number of successful extensions: 488
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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