Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0517
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 155 1e-38
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 154 1e-38
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 154 1e-38
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 92 8e-20
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 83 6e-17
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 58 2e-09
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 42 8e-05
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 38 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.009
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.009
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 31 0.26
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 30 0.35
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 1.1
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 1.1
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 28 1.4
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 1.4
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 28 1.9
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 27 3.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 9.9
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 155 bits (375), Expect = 1e-38
Identities = 73/85 (85%), Positives = 76/85 (89%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
GKGSFKYAWVLDKLKAERE ITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109
Query: 433 XXAVLIVAAGTGEFEAGISKNGXTR 507
AVLI+ GTGEFEAGISK+G TR
Sbjct: 110 DCAVLIIGGGTGEFEAGISKDGQTR 134
Score = 68.9 bits (161), Expect = 8e-13
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGG 205
MGKEK HIN+VVIGHVDSGKSTTTG LIYKCGG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGG 33
Score = 47.2 bits (107), Expect = 3e-06
Identities = 30/63 (47%), Positives = 40/63 (63%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF*GNSRKGKYPHTSKKIWLQTQLLSLFVP 689
HALLA+TLGVKQLIV VNKMD+T +S+ RF + + KK+ + + FVP
Sbjct: 136 HALLAYTLGVKQLIVAVNKMDTT--GWSQARF--EEIVKETSNFIKKVGFNPKTVP-FVP 190
Query: 690 ISG 698
+SG
Sbjct: 191 VSG 193
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 154 bits (374), Expect = 1e-38
Identities = 72/85 (84%), Positives = 76/85 (89%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
GKGSFKYAWVLDKLKAERE ITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109
Query: 433 XXAVLIVAAGTGEFEAGISKNGXTR 507
A+LI+ GTGEFEAGISK+G TR
Sbjct: 110 DCAILIIGGGTGEFEAGISKDGQTR 134
Score = 68.9 bits (161), Expect = 8e-13
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGG 205
MGKEK HIN+VVIGHVDSGKSTTTG LIYKCGG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGG 33
Score = 47.2 bits (107), Expect = 3e-06
Identities = 30/63 (47%), Positives = 40/63 (63%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF*GNSRKGKYPHTSKKIWLQTQLLSLFVP 689
HALLA+TLGVKQLIV VNKMD+T +S+ RF + + KK+ + + FVP
Sbjct: 136 HALLAYTLGVKQLIVAVNKMDTT--GWSQARF--EEIVKETSNFIKKVGFNPKTVP-FVP 190
Query: 690 ISG 698
+SG
Sbjct: 191 VSG 193
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 154 bits (374), Expect = 1e-38
Identities = 72/85 (84%), Positives = 76/85 (89%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
GKGSFKYAWVLDKLKAERE ITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109
Query: 433 XXAVLIVAAGTGEFEAGISKNGXTR 507
A+LI+ GTGEFEAGISK+G TR
Sbjct: 110 DCAILIIGGGTGEFEAGISKDGQTR 134
Score = 68.9 bits (161), Expect = 8e-13
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGG 205
MGKEK HIN+VVIGHVDSGKSTTTG LIYKCGG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGG 33
Score = 47.2 bits (107), Expect = 3e-06
Identities = 30/63 (47%), Positives = 40/63 (63%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF*GNSRKGKYPHTSKKIWLQTQLLSLFVP 689
HALLA+TLGVKQLIV VNKMD+T +S+ RF + + KK+ + + FVP
Sbjct: 136 HALLAYTLGVKQLIVAVNKMDTT--GWSQARF--EEIVKETSNFIKKVGFNPKTVP-FVP 190
Query: 690 ISG 698
+SG
Sbjct: 191 VSG 193
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 92.3 bits (219), Expect = 8e-20
Identities = 44/86 (51%), Positives = 54/86 (62%)
Frame = +1
Query: 250 NGKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 429
+GKGSF YAW+LD + ER +T+D+A FE+ K I DAPGHRDFI MI G S
Sbjct: 219 SGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASS 278
Query: 430 AXXAVLIVAAGTGEFEAGISKNGXTR 507
A AVL+V + FE G +NG TR
Sbjct: 279 ADFAVLVVDSSQNNFERGFLENGQTR 304
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 119 KTHINIVVIGHVDSGKSTTTGXLIYKCG 202
K +++VV GHVDSGKST G ++++ G
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELG 202
Score = 29.5 bits (63), Expect = 0.61
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF 605
HA L LG+ +++V VNK+D +SE RF
Sbjct: 306 HAYLLRALGISEIVVSVNKLDLMS--WSEDRF 335
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 82.6 bits (195), Expect = 6e-17
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
GK S+ +W LD ERE T+++ FET +++DAPGH+ ++ NMI G SQA
Sbjct: 281 GKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQA 340
Query: 433 XXAVLIVAAGTGEFEAGISKNGXTR 507
VL+++A GEFEAG + G TR
Sbjct: 341 DIGVLVISARRGEFEAGFERGGQTR 365
Score = 39.9 bits (89), Expect = 4e-04
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +2
Query: 119 KTHINIVVIGHVDSGKSTTTGXLIYKCG 202
K H+NIV IGHVD+GKST G +++ G
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTG 263
Score = 35.5 bits (78), Expect = 0.009
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF 605
HA+LA T G+ L+V +NKMD +SE R+
Sbjct: 367 HAVLARTQGINHLVVVINKMDEPSVQWSEERY 398
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 58.0 bits (134), Expect = 2e-09
Identities = 28/73 (38%), Positives = 43/73 (58%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
G+ SF +DK E+ ITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 81 GQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATM 140
Query: 433 XXAVLIVAAGTGE 471
A+++V+A G+
Sbjct: 141 DGAIIVVSATDGQ 153
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 113 KEKTHINIVVIGHVDSGKSTTTGXLIYKC 199
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTE 581
H LLA +GVKQ++V +NK+D E
Sbjct: 160 HLLLARQVGVKQIVVYINKVDMVE 183
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 42.3 bits (95), Expect = 8e-05
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 280 VLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIV-- 453
V+D L AER+ ITI+ A F + +ID PGH DF + + AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 454 AAGTGEFEAGISKNGXTRGMP 516
+AG + K RG+P
Sbjct: 127 SAGVEAQTKVVWKQATKRGIP 147
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGXLIYKCG 202
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 283 LDKLKAEREVXITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLI 450
LDKL+ ER IT+ ++ + Y + +ID PGH DF ++ + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 451 VAAGTG 468
V A G
Sbjct: 155 VDASQG 160
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCG 202
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 358 YYVTIIDAPGHRDFIKNMITGTSQAXXAVLIV 453
+ V +ID+PGH DF + A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCG 202
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 358 YYVTIIDAPGHRDFIKNMITGTSQAXXAVLIV 453
+ V +ID+PGH DF + A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 343 FETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAGTG 468
F+ ++T +D PGH F G + A VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 343 FETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAGTG 468
FE S Y + IID PGH DF + AVL++ A +G
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSG 181
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGXLIYKCG 202
NI + H+DSGK+T T ++Y G
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTG 84
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +1
Query: 286 DKLKAER-EVXITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 408
+K++A+ E + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 370 IIDAPGHRDFIKNMITGTSQAXXAVLIV 453
IID PGH F GTS A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 269 LKDPLPFPGPPSRTSRXYVXQYHHIC 192
+ PL P PP +T + Y QY+ +C
Sbjct: 1 MSTPLIPPAPPKKTLQLYTPQYYGLC 26
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 358 YYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAGTG 468
Y + +ID+PGH DF + + + A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 361 YVTIIDAPGHRDFIKNMITGTSQAXXAVLIVA 456
+V+ +D PGH + M+ G + A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 27.1 bits (57), Expect = 3.2
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -2
Query: 453 YDEHSXXSLRGSCDHVLDEISVSRSINDGNIVLASFELPE---SNIDCDTHLTLSL*FVQ 283
+ S R S +LDE+ S S ++ + EL E S++ C + + F
Sbjct: 17 HSPESSRETRFSAQQLLDELKDSYS--SPSVAIQLLELNEQAFSSLGCKLDIHIVQHFSL 74
Query: 282 YPSIFEGSFTISWASFSN 229
S+FE S ++W SFSN
Sbjct: 75 --SLFETSVGMNWKSFSN 90
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +1
Query: 286 DKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIV 453
+++ + + +T+ ++ K +T + ID PGH DF+ + + + VL+V
Sbjct: 187 ERVMSIKSTPLTLAVSDMKGKTFAFQC--IDTPGHVDFVDEVAAPMAISDGVVLVV 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,556
Number of Sequences: 5004
Number of extensions: 60667
Number of successful extensions: 191
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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