Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0517
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                120   1e-27
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              79   6e-15
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           78   8e-15
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                66   2e-11
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.28 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.49 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  120 bits (290), Expect = 1e-27
 Identities = 55/59 (93%), Positives = 56/59 (94%)
 Frame = +1

Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 429
           GKGSFKYAWVLDKLKAERE  ITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 2   GKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 34/62 (54%), Positives = 45/62 (72%)
 Frame = +1

Query: 322 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAGTGEFEAGISKNGX 501
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QA  A+L+V A TGEFEAG    G 
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 502 TR 507
           TR
Sbjct: 61  TR 62



 Score = 31.9 bits (69), Expect = 0.65
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPY 590
           HA+L  +LGV QLIV +NK+D     Y
Sbjct: 64  HAILVRSLGVTQLIVAINKLDMVVLGY 90


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 78.2 bits (184), Expect = 8e-15
 Identities = 36/98 (36%), Positives = 58/98 (59%)
 Frame = +1

Query: 214 TXHREVREGGPGNGKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHR 393
           T  +  RE    N + ++  +W LD  + ER+   T+++    F+T   + T++DAPGH+
Sbjct: 175 TLEKYEREAKEKN-RETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHK 233

Query: 394 DFIKNMITGTSQAXXAVLIVAAGTGEFEAGISKNGXTR 507
            F+ NMI+G +QA   VL+++A  GEFE G  + G TR
Sbjct: 234 SFVPNMISGATQADLGVLVISARKGEFETGFERGGQTR 271



 Score = 36.7 bits (81), Expect = 0.023
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +3

Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF 605
           HA+LA T GVK L++ VNKMD     ++E R+
Sbjct: 273 HAMLAKTAGVKHLVILVNKMDDPTVKWNEERY 304


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/33 (90%), Positives = 30/33 (90%)
 Frame = +2

Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGG 205
           M KEK HINIVVIGHVDSGKSTTTG LIYKCGG
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGG 33


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 13/61 (21%), Positives = 30/61 (49%)
 Frame = +1

Query: 286 DKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAGT 465
           D ++ ER+  I++  ++  F      + I+D PGH+DF ++     +     ++++    
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 466 G 468
           G
Sbjct: 115 G 115


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCG 202
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 122 THINIVVIGHVDSGKSTTTGXLIY 193
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 364 VTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAGTG 468
           +T ID PGH  F      G +     VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,803,455
Number of Sequences: 59808
Number of extensions: 460466
Number of successful extensions: 1028
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)