Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0517
(829 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 163 2e-40
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 163 2e-40
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 163 2e-40
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 132 4e-31
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 110 1e-24
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 110 1e-24
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 85 4e-17
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 74 1e-13
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 60 3e-09
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 60 3e-09
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 58 6e-09
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 58 6e-09
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 58 6e-09
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 33 0.25
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 33 0.25
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.33
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.33
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 5.4
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 29 5.4
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 29 5.4
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 29 5.4
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 29 5.4
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 29 5.4
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.1
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 163 bits (395), Expect = 2e-40
Identities = 76/85 (89%), Positives = 79/85 (92%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
GKGSFKYAWVLDKLKAERE ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 433 XXAVLIVAAGTGEFEAGISKNGXTR 507
AVL+VA GTGEFEAGISKNG TR
Sbjct: 110 DCAVLVVACGTGEFEAGISKNGQTR 134
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/51 (70%), Positives = 36/51 (70%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGGXXXXXXXXXXXXAQEMVK 259
MGKEK HINIVVIGHVDSGKSTTTG LIYKCGG AQEM K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 163 bits (395), Expect = 2e-40
Identities = 76/85 (89%), Positives = 79/85 (92%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
GKGSFKYAWVLDKLKAERE ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 433 XXAVLIVAAGTGEFEAGISKNGXTR 507
AVL+VA GTGEFEAGISKNG TR
Sbjct: 110 DCAVLVVACGTGEFEAGISKNGQTR 134
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/51 (70%), Positives = 36/51 (70%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGGXXXXXXXXXXXXAQEMVK 259
MGKEK HINIVVIGHVDSGKSTTTG LIYKCGG AQEM K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 56.8 bits (131), Expect = 2e-08
Identities = 35/63 (55%), Positives = 39/63 (61%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF*GNSRKGKYPHTSKKIWLQTQLLSLFVP 689
HALLA TLGVKQLIV NKMDSTE P+SE RF + KKI + + FVP
Sbjct: 136 HALLAQTLGVKQLIVACNKMDSTEPPFSEARF--TEITNEVSGFIKKIGYNPKAVP-FVP 192
Query: 690 ISG 698
ISG
Sbjct: 193 ISG 195
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 163 bits (395), Expect = 2e-40
Identities = 76/85 (89%), Positives = 79/85 (92%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
GKGSFKYAWVLDKLKAERE ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 433 XXAVLIVAAGTGEFEAGISKNGXTR 507
AVL+VA GTGEFEAGISKNG TR
Sbjct: 110 DCAVLVVACGTGEFEAGISKNGQTR 134
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/51 (70%), Positives = 36/51 (70%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGGXXXXXXXXXXXXAQEMVK 259
MGKEK HINIVVIGHVDSGKSTTTG LIYKCGG AQEM K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 56.8 bits (131), Expect = 2e-08
Identities = 35/63 (55%), Positives = 39/63 (61%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF*GNSRKGKYPHTSKKIWLQTQLLSLFVP 689
HALLA TLGVKQLIV NKMDSTE P+SE RF + KKI + + FVP
Sbjct: 136 HALLAQTLGVKQLIVACNKMDSTEPPFSEARF--TEITNEVSGFIKKIGYNPKAVP-FVP 192
Query: 690 ISG 698
ISG
Sbjct: 193 ISG 195
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 132 bits (318), Expect = 4e-31
Identities = 61/68 (89%), Positives = 64/68 (94%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
GKGSFKYAWVLDKLKAERE ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 433 XXAVLIVA 456
AVL+VA
Sbjct: 110 DCAVLVVA 117
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/51 (70%), Positives = 36/51 (70%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGGXXXXXXXXXXXXAQEMVK 259
MGKEK HINIVVIGHVDSGKSTTTG LIYKCGG AQEM K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 36.3 bits (80), Expect = 0.027
Identities = 23/51 (45%), Positives = 28/51 (54%)
Frame = +3
Query: 546 LIVGVNKMDSTEXPYSEPRF*GNSRKGKYPHTSKKIWLQTQLLSLFVPISG 698
L+V NKMDSTE P+SE RF + KKI + + FVPISG
Sbjct: 114 LVVACNKMDSTEPPFSEARF--TEITNEVSGFIKKIGYNPKAVP-FVPISG 161
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 110 bits (264), Expect = 1e-24
Identities = 50/86 (58%), Positives = 61/86 (70%)
Frame = +1
Query: 250 NGKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 429
NGK SF YAWVLD+ + ERE +T+DI FETS + ++DAPGH+DFI NMITGTSQ
Sbjct: 212 NGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQ 271
Query: 430 AXXAVLIVAAGTGEFEAGISKNGXTR 507
A A+L+V A TGEFE G G T+
Sbjct: 272 ADAAILVVNATTGEFETGFENGGQTK 297
Score = 36.7 bits (81), Expect = 0.020
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 116 EKTHINIVVIGHVDSGKSTTTGXLIY 193
+K IN++V+GHVD+GKST G L++
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLH 192
Score = 35.5 bits (78), Expect = 0.047
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF 605
HALL +LGV QLIV VNK+D+ + +S+ RF
Sbjct: 299 HALLLRSLGVTQLIVAVNKLDTVD--WSQDRF 328
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 110 bits (264), Expect = 1e-24
Identities = 50/86 (58%), Positives = 61/86 (70%)
Frame = +1
Query: 250 NGKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 429
NGK SF YAWVLD+ + ERE +T+DI FETS + ++DAPGH+DFI NMITGTSQ
Sbjct: 230 NGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQ 289
Query: 430 AXXAVLIVAAGTGEFEAGISKNGXTR 507
A A+L+V A TGEFE G G T+
Sbjct: 290 ADAAILVVNATTGEFETGFENGGQTK 315
Score = 36.7 bits (81), Expect = 0.020
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 116 EKTHINIVVIGHVDSGKSTTTGXLIY 193
+K IN++V+GHVD+GKST G L++
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLH 210
Score = 35.5 bits (78), Expect = 0.047
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF 605
HALL +LGV QLIV VNK+D+ + +S+ RF
Sbjct: 317 HALLLRSLGVTQLIVAVNKLDTVD--WSQDRF 346
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/85 (44%), Positives = 54/85 (63%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
G+ S+ +W +D ERE T+++ FET K + TI+DAPGH+ F+ NMI G +QA
Sbjct: 152 GRESWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQA 211
Query: 433 XXAVLIVAAGTGEFEAGISKNGXTR 507
AVL+++A GEFE G + G TR
Sbjct: 212 DLAVLVISARRGEFETGFDRGGQTR 236
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +2
Query: 110 GKEKTHINIVVIGHVDSGKSTTTGXLIYKCG 202
G K HIN+V +GHVD+GKST G L++ G
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTG 134
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF*GNSRKGKYPHTSKKIWLQTQLLSLFVP 689
H++L T GVK L++ VNKMD + E RF +GK +K+ + +VP
Sbjct: 238 HSMLVKTAGVKHLVILVNKMDDPTVKWEEERF--KEIEGKLTPFLRKLGFNPKTDITYVP 295
Query: 690 ISGM 701
SG+
Sbjct: 296 CSGL 299
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/51 (70%), Positives = 36/51 (70%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGGXXXXXXXXXXXXAQEMVK 259
MGKEK HINIVVIGHVDSGKSTTTG LIYKCGG AQEM K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAER 306
GKGSFKYAWVLDKLK +
Sbjct: 50 GKGSFKYAWVLDKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 59.7 bits (138), Expect = 3e-09
Identities = 31/65 (47%), Positives = 41/65 (63%)
Frame = +1
Query: 283 LDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAG 462
+DK K E++ ITI++A +E+ + D PGH DFIKNMI GTSQ AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 463 TGEFE 477
G E
Sbjct: 143 DGVME 147
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 119 KTHINIVVIGHVDSGKSTTTGXL 187
K ++N+ IGH+D GK+T T +
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAI 65
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 59.7 bits (138), Expect = 3e-09
Identities = 31/65 (47%), Positives = 41/65 (63%)
Frame = +1
Query: 283 LDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAG 462
+DK K E++ ITI++A +E+ + D PGH DFIKNMI GTSQ AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 463 TGEFE 477
G E
Sbjct: 143 DGVME 147
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 119 KTHINIVVIGHVDSGKSTTTGXL 187
K ++N+ IGH+D GK+T T +
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAI 65
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 58.4 bits (135), Expect = 6e-09
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = +1
Query: 283 LDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAG 462
+D E+ ITI+ ++ET+K + ID PGH D+IKNMITG +Q A+L+VAA
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 146
Query: 463 TG 468
G
Sbjct: 147 DG 148
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 113 KEKTHINIVVIGHVDSGKSTTTGXL 187
++K H+N+ IGHVD GK+T T +
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAI 69
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 58.4 bits (135), Expect = 6e-09
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = +1
Query: 283 LDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAG 462
+D E+ ITI+ ++ET+K + ID PGH D+IKNMITG +Q A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 463 TG 468
G
Sbjct: 148 DG 149
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 113 KEKTHINIVVIGHVDSGKSTTTGXL 187
++K H+N+ IGHVD GK+T T +
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAI 70
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 58.4 bits (135), Expect = 6e-09
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = +1
Query: 283 LDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAG 462
+D E+ ITI+ ++ET+K + ID PGH D+IKNMITG +Q A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 463 TG 468
G
Sbjct: 148 DG 149
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 113 KEKTHINIVVIGHVDSGKSTTTGXL 187
++K H+N+ IGHVD GK+T T +
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAI 70
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +1
Query: 280 VLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAA 459
+LDKL+ ERE IT+ Y + +ID PGH DF + + +L+VAA
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAA 135
Query: 460 GTG 468
G
Sbjct: 136 NQG 138
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGXLIYKCG 202
N ++ HVD GKST L+ CG
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCG 67
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 33.1 bits (72), Expect = 0.25
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +1
Query: 238 GGPGNGKGSFKYAWVLDKLKAEREVXITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMI 414
G +GK + A ++ A IT I + E +K VT +D PGH F
Sbjct: 163 GHVDHGKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRA 222
Query: 415 TGTSQAXXAVLIVAAGTG 468
G A VL+VAA G
Sbjct: 223 RGAKGADIVVLVVAADDG 240
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 280 VLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDF 399
V D L ERE IT+ A + + + +ID PGH DF
Sbjct: 64 VTDFLDIERERGITVQSAAVNLDWKGHRINLIDTPGHVDF 103
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGXLIYKCG 202
NI VI HVD+GK+T T L+Y G
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAG 50
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCG 202
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +1
Query: 283 LDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAG 462
L+ +K E + T+++ K + + + + +ID+PGH DF + A+++V
Sbjct: 86 LEFVKGENQFE-TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCV 144
Query: 463 TG 468
+G
Sbjct: 145 SG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCG 202
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +1
Query: 283 LDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAG 462
L+ +K E + T+++ K + + + + +ID+PGH DF + A+++V
Sbjct: 86 LEFVKGENQFE-TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCV 144
Query: 463 TG 468
+G
Sbjct: 145 SG 146
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 283 LDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAG 462
+D + ER+ ITI A + + IID PGH DF + AVL++ G
Sbjct: 87 MDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CG 145
Query: 463 TG 468
G
Sbjct: 146 VG 147
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGXLIYKCG 202
NI + H+DSGK+T T ++Y G
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAG 69
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 128 INIVVIGHVDSGKSTTT 178
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 128 INIVVIGHVDSGKSTTT 178
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 322 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAGTG 468
+ I + Y + IID PGH +F M A V++V A G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 708 PCPSQKWARKATAAGFVAKSSWXYEDTSPSLNSLKIWAHCMVXQWNPFCLLLR 550
P K A T +G V + Y D L+ L W +WNP+C L++
Sbjct: 473 PFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQ 525
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 322 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAGTG 468
+ I + Y + IID PGH +F M A V++V A G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 101 PKMGKEKTHINIVVIGHVDSGKSTTTGXLIY 193
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 101 PKMGKEKTHINIVVIGHVDSGKSTTTGXLIY 193
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 364 VTIIDAPGHRDFI--KNMITGTSQAXXAVLIVAAGTGEFEAGIS 489
V IID+ G RDFI KN+ GT+ A V+ A E +S
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGTADA-FLVVFAADDASSLEEALS 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,629,255
Number of Sequences: 27780
Number of extensions: 343011
Number of successful extensions: 925
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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