Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0517
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   171   9e-45
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   163   2e-42
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   153   1e-39
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   126   2e-31
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    30   0.023
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  171 bits (415), Expect = 9e-45
 Identities = 104/189 (55%), Positives = 113/189 (59%)
 Frame = +1

Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
           GKGSFKYAWVLDKLKAERE  ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA
Sbjct: 50  GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 109

Query: 433 XXAVLIVAAGTGEFEAGISKNGXTRGMPCXXXXXXXXXXXXE*TKWIPLXHHTVSPDFEG 612
             AVLIVAAGTGEFEAGISKNG TR                   K            FE 
Sbjct: 110 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEE 169

Query: 613 IQGRGSILIXPRRFGYKPSCCRFSCPFLGWARRQHVGXFXQKCLCSKGWAVGA*SKXXLD 792
           I+   S  I  ++ GY P+   F  P  GW    ++     K    KGW V    +  ++
Sbjct: 170 IKKEVSSYI--KKIGYNPAAVAF-VPISGW-HGDNMLEVSSKMPWFKGWTVER-KEGKVE 224

Query: 793 GKIXXIEAL 819
           GK   IEAL
Sbjct: 225 GK-CLIEAL 232



 Score = 73.3 bits (172), Expect = 2e-15
 Identities = 36/51 (70%), Positives = 36/51 (70%)
 Frame = +2

Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGGXXXXXXXXXXXXAQEMVK 259
           MGKEK HINIVVIGHVDSGKSTTTG LIYKCGG            AQEM K
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  163 bits (395), Expect = 2e-42
 Identities = 78/85 (91%), Positives = 79/85 (92%)
 Frame = +1

Query: 253 GKGSFKYAWVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
           GKGSFKYAWVLDKLKAERE  ITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQA
Sbjct: 50  GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQA 109

Query: 433 XXAVLIVAAGTGEFEAGISKNGXTR 507
             AVLIVAAG GEFEAGISKNG TR
Sbjct: 110 DCAVLIVAAGIGEFEAGISKNGQTR 134



 Score = 73.3 bits (172), Expect = 2e-15
 Identities = 36/51 (70%), Positives = 36/51 (70%)
 Frame = +2

Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGXLIYKCGGXXXXXXXXXXXXAQEMVK 259
           MGKEK HINIVVIGHVDSGKSTTTG LIYKCGG            AQEM K
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51



 Score = 67.3 bits (157), Expect = 2e-13
 Identities = 39/63 (61%), Positives = 43/63 (68%)
 Frame = +3

Query: 510 HALLAFTLGVKQLIVGVNKMDSTEXPYSEPRF*GNSRKGKYPHTSKKIWLQTQLLSLFVP 689
           HALLAFTLGVKQLIVGVNKMD T+ PYSE RF     K +     KKI   T  ++ FVP
Sbjct: 136 HALLAFTLGVKQLIVGVNKMDMTDPPYSEARF--EEIKKEVSSYIKKIGYNTASVA-FVP 192

Query: 690 ISG 698
           ISG
Sbjct: 193 ISG 195


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  153 bits (372), Expect = 1e-39
 Identities = 96/181 (53%), Positives = 105/181 (58%)
 Frame = +1

Query: 277 WVLDKLKAEREVXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVA 456
           WVLDKLKAERE  ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA  AVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 457 AGTGEFEAGISKNGXTRGMPCXXXXXXXXXXXXE*TKWIPLXHHTVSPDFEGIQGRGSIL 636
           AGTGEFEAGISKNG TR                   K            FE I+   S  
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 637 IXPRRFGYKPSCCRFSCPFLGWARRQHVGXFXQKCLCSKGWAVGA*SKXXLDGKIXXIEA 816
           I  ++ GY P+   F  P  GW    ++     K    KGW V    +  ++GK   IEA
Sbjct: 121 I--KKIGYNPAAVAF-VPISGW-HGDNMLEVSSKMPWFKGWTVER-KEGKVEGK-CLIEA 174

Query: 817 L 819
           L
Sbjct: 175 L 175


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  126 bits (305), Expect = 2e-31
 Identities = 82/165 (49%), Positives = 91/165 (55%)
 Frame = +1

Query: 325 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAGTGEFEAGISKNGXT 504
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA  AVLIVAAGTGEFEAGISKNG T
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 505 RGMPCXXXXXXXXXXXXE*TKWIPLXHHTVSPDFEGIQGRGSILIXPRRFGYKPSCCRFS 684
           R                   K            FE I+   S  I  ++ GY P+   F 
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYI--KKIGYNPAAVAF- 117

Query: 685 CPFLGWARRQHVGXFXQKCLCSKGWAVGA*SKXXLDGKIXXIEAL 819
            P  GW    ++     K    KGW V    +  ++GK   IEAL
Sbjct: 118 VPISGW-HGDNMLEVSSKMPWFKGWTVER-KEGKVEGK-CLIEAL 159


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 30.3 bits (65), Expect = 0.023
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 364 VTIIDAPGHRDFIKNMITGTSQAXXAVLIVAAGTG 468
           VT +D PGH  FI     G       VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229



 Score = 25.4 bits (53), Expect = 0.65
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 119 KTHINIVVIGHVDSGKST 172
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 128 INIVVIGHVDSGKST 172
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 627 SPSLNSLKIWAHCMVXQWNPFCLLLR 550
           SPS +++  W   +   W P  L++R
Sbjct: 340 SPSTHNMSPWVRQVFLNWMPRLLMMR 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,307
Number of Sequences: 438
Number of extensions: 3959
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)