Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0516
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    28   1.6  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   2.1  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   3.7  

>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +1

Query: 70  YCDVDFSERPRNFSIELLYHTQTXTDGHVVISPFGIWTLMTGIALGASGNSYRQLSRAFI 249
           Y  + F+E   N +      TQT  D     +PFG++ L+ G+    S    R +  AF 
Sbjct: 248 YHGMVFTETFGNLAYAFACRTQTLRDVGGNANPFGVFLLLQGLET-LSLRMERHVQNAFA 306

Query: 250 LPKIRQRLSK 279
           L K  ++  K
Sbjct: 307 LAKYLEKHPK 316


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 28/88 (31%), Positives = 35/88 (39%)
 Frame = +1

Query: 181 TLMTGIALGASGNSYRQLSRAFILPKIRQRLSKGTNP*RTWCSIRPRTEYPWSAGTLSSW 360
           TL       AS  S RQ       P  R R    +   R   S+    EY  S   LS  
Sbjct: 711 TLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSGQQRPSSSMSLYGEYNKSQPQLSMQ 770

Query: 361 TTISPYCRPSGRRSRRISVLRLKCSTSA 444
            ++SP   P G   R  SVL+ + STS+
Sbjct: 771 RSVSP--NPLGPNRRSSSVLQSQKSTSS 796


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 311 IEHHVRQGFVPFDKRC 264
           I HHVR+ + PF+ RC
Sbjct: 299 IYHHVRRAYNPFEDRC 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,095
Number of Sequences: 5004
Number of extensions: 51736
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)