Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0516
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0572 + 23972319-23973683 32 0.41
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 31 0.95
11_01_0771 + 6453130-6454488 29 2.9
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 29 3.9
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 29 3.9
07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361... 28 6.7
04_04_0619 + 26652923-26653267,26653440-26654273 28 6.7
03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151... 28 6.7
03_02_0767 - 11009682-11010251 28 6.7
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 28 8.9
>02_04_0572 + 23972319-23973683
Length = 454
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +1
Query: 340 AGTLSSWTTISPYCR----PSGRRSRRISVLRL 426
AG LSSW +P+CR GRR R++ L L
Sbjct: 47 AGVLSSWNKTTPFCRWNGVKCGRREHRVTALEL 79
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 31.1 bits (67), Expect = 0.95
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 201 SDSRHQSPYPKRRDHNVPISXSL 133
SDSR Q P+P RDHN +S S+
Sbjct: 584 SDSRGQGPHPNFRDHNGGVSSSI 606
>11_01_0771 + 6453130-6454488
Length = 452
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 530 ESXXILTNVISFKSLXGLPFNKSDTETXSPF 622
E+ +L N I FK PFN+SDTE PF
Sbjct: 201 ETAVVLGNAIYFKGKWDRPFNESDTE-RKPF 230
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 427 LIEAPKSFWSVVLKAGNKVKSLSKKTKFRL-TRDTPFAV*SSTTSVRDLYPSI 272
++E S SV + G+ +K + ++TKFRL + D P+ S SV +P++
Sbjct: 319 VVEVGVSTSSVPITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTS-FPNV 370
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 257 KSGNAYRRVQIPDGRGARSDRERSIPGQPELCLL 358
KSG+ Y DG G++ RERS P P CL+
Sbjct: 236 KSGHHYIPCVDFDGDGSQRHRERSCPRLPATCLV 269
>07_01_0480 +
3616123-3617506,3618033-3618166,3618578-3618818,
3618912-3619120,3619234-3619265,3619363-3619474,
3619609-3619890
Length = 797
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 558 YPSKAFXDCRSTNLTPKLGAL 620
YPSK F D R + T KLGAL
Sbjct: 453 YPSKLFADARYISQTVKLGAL 473
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 351 VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSXPNSARIA--NTYI-EKSGGRVSN 506
+F+D L P F++T GA + +DF +A A N +I + + GR++N
Sbjct: 83 IFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNN 137
>03_06_0259 +
32712976-32714335,32714454-32714587,32714904-32715144,
32715254-32715462,32715522-32715583,32715690-32715801,
32715916-32716208,32716400-32716520
Length = 843
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 558 YPSKAFXDCRSTNLTPKLGAL 620
YPSK F D R + T KLGAL
Sbjct: 445 YPSKMFADARYISQTVKLGAL 465
>03_02_0767 - 11009682-11010251
Length = 189
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 315 SDRAPRPSGICTLR*ALPDFWQNKRSAQLPIAITGRS*SDSRHQSPYPKRR 163
S A P G C +R LP W + A L +A+ S R + P+RR
Sbjct: 14 SSPASPPLGRCVVRIRLPPAWTPEEDAVLRLAMENGSRHWRRMAAQMPRRR 64
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 403 WSVVLKAGNKVKSLSKKTKFRLTRD 329
W ++ GN+V S+ K KFR RD
Sbjct: 57 WIGIICTGNRVTSMLKTVKFRTVRD 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,683,929
Number of Sequences: 37544
Number of extensions: 353391
Number of successful extensions: 790
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -