Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0516
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 33 0.24
SB_14712| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026) 29 3.0
SB_8850| Best HMM Match : LIM (HMM E-Value=0.51) 29 3.9
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 29 5.2
SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43) 29 5.2
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_24190| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_39494| Best HMM Match : Cm_res_leader (HMM E-Value=2.8) 28 9.1
SB_21821| Best HMM Match : MRG (HMM E-Value=0) 28 9.1
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = +3
Query: 252 AKNPATLIEGYKSLTDVVLDQTANGVSLVSRNFVFLDNDFTLLPAFRTTLQKDFGASIK 428
+KN +TL + Y +L+ VL+ + S +S+N++ L +++ L TL K++ K
Sbjct: 88 SKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYSTLSK 146
>SB_14712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -2
Query: 310 SSTTSVRDLYPSISVAGFLAK*TLC-SAAYSYYRTLLKRFPSSK-SISQTARSQRAHQXE 137
++TT V+DL PS + + T C S++ +Y + +PSS+ +S T + R H+
Sbjct: 103 TTTTVVKDLTPSPTTSNVKIDATTCPSSSITYKSSSYTVYPSSRYKLSLTGLAGRVHRFI 162
Query: 136 SACGIKVQC 110
AC + C
Sbjct: 163 GACHSRRFC 171
>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
Length = 1532
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 249 FAKNPATLIEGYKSLTDVVLDQTANGVSLVSRNFVFLDNDFTLLPAFRTTLQ 404
F K+P+ Y +T V Q+ SL +NF DND+ L +T+L+
Sbjct: 1443 FTKDPSANAMNYAKMTAAVAAQSCERGSLAKQNFT--DNDYALKLYNQTSLE 1492
>SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)
Length = 1039
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 117 FNAKIPWSLAEIDITITRADEKKN 46
FN ++PWS IT+TR D K +
Sbjct: 15 FNERVPWSSYCFPITVTRKDRKND 38
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +3
Query: 252 AKNPATLIEGYKSLTDVVLDQTANGVSLVSRNFVFLDNDFTLL 380
+KN +TL + Y +L+ VL+ + S +S+N++ L +++ L
Sbjct: 88 SKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSKNYSTL 130
>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
Length = 443
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 175 IWTLMTGIALGASGNSYRQLSRAFILPKIRQRLSKGTNP*RTWCSIRP-----RTEYPWS 339
IW L G+ A RQ +++ K ++ K +NP R+ CS+ +T Y W
Sbjct: 377 IWRLRAGVLQAAEMKKKRQKAQSLAERKKIKKEKKKSNPRRSKCSVPGLSCFYQTNYHWK 436
Query: 340 AGTLSSWT 363
L WT
Sbjct: 437 VPPL--WT 442
>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 360 PRRQSSG*PGILRSRSDRAPRPSGICTLR*ALPDFWQNK-RSAQLPIAITGRS*SDSRHQ 184
P R+S P RSDR P P + + +P W++ RS P+ + RS S
Sbjct: 36 PSRRSDRTPAPPSRRSDRTPAPPSRRSDQTPVPPSWRSDLRSDLTPVPPSRRSDLISDRT 95
Query: 183 SPYPKRRDHNVPISXSLR 130
P R P+ S R
Sbjct: 96 PVPPSRSSDLTPVPPSRR 113
>SB_24190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +1
Query: 31 YSIAFVLFFVGACYC-DVDFSERPRNFSIELLYHTQTXTDGHVVISPFGIW 180
Y VLFF D F E P + + Y TD HV + P +W
Sbjct: 78 YYRLIVLFFAAINNSSDTSFLELPPSLPEPIAYFRLDGTDQHVTVLPLSMW 128
>SB_39494| Best HMM Match : Cm_res_leader (HMM E-Value=2.8)
Length = 159
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 357 RRQSSG*PGILRSRSDRAPRPSGICTLR 274
++Q SG PG L +R R PR +C R
Sbjct: 117 KQQDSGVPGTLSTRRRRTPRTLDLCARR 144
>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
Length = 292
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 434 EHFNRSTEILLERRPEGRQ*GEIVVQEDKVPADQGYSVRGLIEHHVRQG 288
E+FN L + E Q GEI+V+ +P Q Y L+ VR G
Sbjct: 192 EYFNVMLGTQLLYKFERPQYGEILVENSNLPMSQVYGAEHLLRLFVRLG 240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,342,183
Number of Sequences: 59808
Number of extensions: 404112
Number of successful extensions: 892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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