Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0516
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.98 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 178 WTLMTGIALGASG 216
           WTLM  IAL ASG
Sbjct: 4   WTLMAAIALAASG 16


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 466 PTPTSKNPGDASRTSXL*RLPRIXVXTNQRD 558
           P P SK P D  R+     LPR  + +N+RD
Sbjct: 58  PGPGSKGPRDFPRSHRFKSLPRCQL-SNKRD 87


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 4   RAGREQCRMYSIAFVLFFVGACYCDVDFSERPRN 105
           RA R     + IA +     A Y D+++ E P+N
Sbjct: 149 RAIRSIFGAWLIALIFAMPFATYVDINYVEYPQN 182


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 209 APKAIPVIKVHIPNGEITTCPSV*VCVWYKSSMLKFLGLSLK 84
           A  ++PV+ V    G I   PSV + +W +  +   L L  K
Sbjct: 2   AGNSVPVLLVTANVGSIFEEPSVMLKIWTEEFLSTILRLDPK 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,438
Number of Sequences: 438
Number of extensions: 3554
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)