Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0516
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35580.1 68415.m04357 serpin family protein / serine protease...    32   0.46 
At4g21180.1 68417.m03063 DNAJ heat shock N-terminal domain-conta...    29   4.3  
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi...    28   5.6  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   7.4  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    28   7.4  
At4g34750.1 68417.m04932 auxin-responsive protein, putative / sm...    27   9.8  

>At2g35580.1 68415.m04357 serpin family protein / serine protease
           inhibitor family protein similar to protein zx [Hordeum
           vulgare subsp. vulgare] GI:19071, serpin [Triticum
           aestivum] GI:1885350; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 374

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +3

Query: 291 LTDVVLDQTANGVSLVSR-NFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF--SXPNSAR 461
           +T V+ D TA+G   +S  N ++++    + P+F+  L   + A+   +DF        R
Sbjct: 77  VTTVLADSTASGGPTISAANGLWIEKTLNVEPSFKDLLLNSYKAAFNRVDFRTKADEVNR 136

Query: 462 IANTYIEK-SGGRVSNV 509
             N+++EK + G ++N+
Sbjct: 137 EVNSWVEKQTNGLITNL 153


>At4g21180.1 68417.m03063 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 661

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 112 IELLYHTQTXTDGHVVISPFGIWTLMTGIALGASGNSYRQLS 237
           I L+YHT+  +    +  PFGI  L  G +      +YR+LS
Sbjct: 82  IFLIYHTKNMSRESQLFEPFGILGLEPGASDSEIKKAYRRLS 123


>At1g47710.1 68414.m05302 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 391

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 300 VVLDQTANGVSLVS-RNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSXPNSARIA--N 470
           V+ D +ANG   +S  N  ++D   +  P+F+  L+  + A+    DF       IA  N
Sbjct: 80  VLADGSANGGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKAASNQADFQSKAVEVIAEVN 139

Query: 471 TYIEK-SGGRVSNV 509
           ++ EK + G ++ V
Sbjct: 140 SWAEKETNGLITEV 153


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
 Frame = -3

Query: 420 KHRNPSGASS*R----PAIR*NRCP---RRQSSG*PGILRSRSDRAPR-----PSGICTL 277
           +HR+P+  +  R    P  R +R P   RR+ S  P   R RS   P      PS +   
Sbjct: 339 RHRSPTPPARQRRSPSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRR 398

Query: 276 R*ALPDFWQNKRSAQLPIAITGRS*SDSRHQSPYPKRRD 160
             +    ++  RS   P+A  GRS S  R  SP  + RD
Sbjct: 399 NRSPSPLYRRNRSRS-PLAKRGRSDSPGRSPSPVARLRD 436


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/87 (21%), Positives = 36/87 (41%)
 Frame = +3

Query: 231 AEQSVYFAKNPATLIEGYKSLTDVVLDQTANGVSLVSRNFVFLDNDFTLLPAFRTTLQKD 410
           AE++  + +     ++  ++  D          SL+ + ++ L  DF+ L +    LQ D
Sbjct: 22  AERADEYIRKIYAELDSVRAKADAASITAEQTCSLLEQKYLSLSQDFSSLESQNAKLQSD 81

Query: 411 FGASIKVLDFSXPNSARIANTYIEKSG 491
           F   +  L  S     ++    IEK G
Sbjct: 82  FDDRLAELAQSQAQKHQLHLQSIEKDG 108


>At4g34750.1 68417.m04932 auxin-responsive protein, putative / small
           auxin up RNA (SAUR_E) contains similarity to
           indole-3-acetic acid induced protein ARG7 SP:P32295 from
           [Phaseolus aureus]
          Length = 150

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 530 LGSRQSXDVRDASPGFFDVGVGYSSRIRVAEVEHFN 423
           +GS  +  V D  PG   V VG + R  V   +H N
Sbjct: 26  IGSSNNDPVSDVPPGHVAVSVGENRRRYVVRAKHLN 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,640
Number of Sequences: 28952
Number of extensions: 277801
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)