Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0515
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.1
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 2.5
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 3.3
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 5.8
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 5.8
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 5.8
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 5.8
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 5.8
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 5.8
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.7
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 33 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 212
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 213 TEKTQKSLFDGI 248
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 217 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 86
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 224 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 120
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 298 PASGQRRCRSGESPPEPLGRXRTLRQDXDEAHDDGRXESTAPDRSY 435
P+ ++ R+G S R RT+R DEA ES + D SY
Sbjct: 85 PSKHRKGTRNGSS----FSRHRTIRDLDDEAESVTSEESESDDSSY 126
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 229 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 131
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 7.7
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +3
Query: 84 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 254
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD +++
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,859
Number of Sequences: 5004
Number of extensions: 32282
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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