Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0515
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    30   0.93 
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    29   2.8  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    28   5.0  
At5g20540.1 68418.m02439 expressed protein                             27   8.7  
At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family prote...    27   8.7  
At4g15820.1 68417.m02407 wound-responsive protein-related contai...    27   8.7  
At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 221 LLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 102
           ++ GN    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 69  SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 233
           S+ +  +  DLPK+  +  SQ E     + S    +DT E ++ P+AED   E    S
Sbjct: 78  SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 69  SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 221
           S SD+PS  L+D+  ++ +LK  L+G  +     VDTN       AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579


>At5g20540.1 68418.m02439 expressed protein
          Length = 384

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 72  VSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 218
           ++ TP +  +    T+  S      +S  RD D +E++ + +A DV  E
Sbjct: 282 LNSTPKVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNE 330


>At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 351

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 281 ETQEKNPLPDKDVVAAEKAHQNLLDG 358
           E  EK   PDK +V  E A+ +LL+G
Sbjct: 294 ELYEKAKSPDKKIVLYENAYHSLLEG 319


>At4g15820.1 68417.m02407 wound-responsive protein-related contains
           weak similarity to KED [Nicotiana tabacum]
           gi|8096269|dbj|BAA95789
          Length = 460

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 45  IY*FRMACSV---SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 185
           I+ F+  C+V    D+   +  P+V++D     EG N   L DV+ NEKI
Sbjct: 92  IFAFQTVCAVLFLGDSTKSEKTPEVSSDS----EGNNLVLLEDVEMNEKI 137


>At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 558

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -3

Query: 230 LLGLLSGNVFSRRKHNLFIGVDVTETAGVEAFELT----LQVCGDLGEVFQGGSVTHGAG 63
           + GL+SGN  S     L+  +   ET G+   E+T    L  C  LG+V +G ++ HG  
Sbjct: 182 IAGLVSGNRASEAME-LYKRM---ETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYS 237

Query: 62  HSESI 48
           +   I
Sbjct: 238 NDNVI 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,979,703
Number of Sequences: 28952
Number of extensions: 184648
Number of successful extensions: 597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)