Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0514
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   4.7  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    25   8.2  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.2  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   8.2  

>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 176 IDNYGCQSDRQLTSATSRIYLRVEKWKQNICKKHFHTNS 292
           +D    Q+  Q+ + +S++ +  EK KQN+   + +TNS
Sbjct: 23  LDELEQQAQTQVQAQSSQVVVPSEKQKQNLNLPNSYTNS 61


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 137 HFFCAQLSLSKSPIDNYGCQSDRQLTSA 220
           H F  QL+  +  +D Y   SDR + SA
Sbjct: 151 HIFLPQLNFLRHVVDKYKSLSDRIIMSA 178


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 249 NGNKTFAKNTFIRIRVYFPLDYDFSQLFEELLSLMWSL*YI 371
           N +    +NT  +  +  P+D+     F  +LS+ W+  +I
Sbjct: 69  NRHTDLEENTEFKANLVSPVDFHAGYCFAAILSISWATGFI 109


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 168 SHPLTI---TAVRVTDSSRQQQVEFISGSKNGNKTFAKNT 278
           S PL +   T+ + ++ ++ ++  F+S SKN +  ++K T
Sbjct: 154 SRPLALSSDTSYQKSEKAKSEKSPFLSTSKNSDANYSKTT 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,012
Number of Sequences: 5004
Number of extensions: 31209
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)