Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0514
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247           28   4.7  
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438...    27   6.2  

>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
          Length = 722

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 122 VPFVRHFFCAQLSL---SKSPIDNYGCQSDRQL-TSATS 226
           VPFV  F  A +S     + P+DNY C+S      +ATS
Sbjct: 266 VPFVLDFAIANVSCPAQGQPPLDNYACRSSNSFCVNATS 304


>06_03_1298 + 29141578-29141623,29142129-29142250,29143818-29143874,
            29143983-29144138,29144220-29144304,29144575-29144665,
            29144807-29144971,29145064-29145186,29145334-29145409,
            29145513-29145642,29145951-29147824,29148339-29148529,
            29148697-29148860,29149164-29149275,29149276-29149294
          Length = 1136

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 305  REVHTNSYESVFCKCFVSIF 246
            R V   SY   FCKC+V +F
Sbjct: 1110 RSVFFESYAFAFCKCYVGLF 1129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,292,976
Number of Sequences: 37544
Number of extensions: 155240
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)