Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0514
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.30 
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   3.6  
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   3.6  
SB_4673| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 800

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 159 ESCAQKKCRTNGTRICFYLMNFNYT 85
           ESC + +C+ NGT  C YL N NYT
Sbjct: 155 ESCQEDQCKNNGT--CQYLGNGNYT 177


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 8   KHLNLIITKTKATLKQLNK*LINALRV*LKFIK 106
           KH++ IIT  K  LK ++  +I+A+RV ++ IK
Sbjct: 140 KHIDRIITLQKKILKTIDPNVIDAIRVKIRQIK 172


>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 594

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 117 YVCRLFDISFAHNFHCQSHPLTI 185
           Y C L D +F+H+ HC  H  T+
Sbjct: 378 YKCALCDKAFSHSSHCNRHMETV 400


>SB_4673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 213 RQQQVEFISGSKNGNKTFAKNTFIRIRVYFP 305
           R+ +   +    NG  TF+K  F R+  YFP
Sbjct: 60  RRNRTRNLDSRVNGFSTFSKRLFYRLPTYFP 90


>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1301

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 134 RHFFCAQLSLSKSPIDNY 187
           RHF CA LS  K P DN+
Sbjct: 506 RHFSCAALSSDKEPGDNH 523


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,943,904
Number of Sequences: 59808
Number of extensions: 214496
Number of successful extensions: 550
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)