Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0514
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20200.1 68416.m02560 protein kinase family protein contains ...    29   1.7  
At3g53760.1 68416.m05939 tubulin family protein similar to SP|Q9...    27   5.2  
At1g34650.1 68414.m04309 homeobox-leucine zipper family protein ...    27   5.2  
At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containi...    27   9.1  
At2g47630.1 68415.m05942 esterase/lipase/thioesterase family pro...    27   9.1  
At1g77960.1 68414.m09085 hypothetical protein                          27   9.1  
At1g29460.1 68414.m03604 auxin-responsive protein, putative simi...    27   9.1  

>At3g20200.1 68416.m02560 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 780

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 111 NKYVCRLFDISFAHN---FHCQSHPLTITAVRVTDSSRQQQVEFISGSKNGNKTFAKNTF 281
           + Y    FD+  + N   F C   P T ++ R + S+ +  + F+S  +    T    +F
Sbjct: 219 SNYANSFFDLEDSENDISFVCSGRPSTASSGRPSTSTGRSDISFVSSGRPSTSTTGSPSF 278

Query: 282 I 284
           I
Sbjct: 279 I 279


>At3g53760.1 68416.m05939 tubulin family protein similar to
           SP|Q9SC88 Gamma-tubulin complex component 4 homolog
           {Medicago truncatula}, SP|Q9UGJ1|GCP4_HUMAN
           Gamma-tubulin complex component 4 {Homo sapiens};
           contains Pfam profile PF04130: Spc97 / Spc98 family
          Length = 745

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 111 NKYVCRLFDISFAHNFHCQSHPLTITAVRVTDSSRQQQVEFISGSKNGNKTFAKNTFI 284
           +K    L D+  +  FH +S   T+ +VR   +S   Q+  +    NG+    K+ F+
Sbjct: 356 DKIEAMLKDLKESSEFHKRSFECTVDSVRAIAASHLWQLVVVRADLNGHLKALKDYFL 413


>At1g34650.1 68414.m04309 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
            homeobox 1 (GP:12002853) {Picea abies}; contains Pfam
           PF00046: Homeobox domain and Pfam PF01852: START domain
          Length = 708

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 126 RLFDISFAHNFHCQSHPLTITAVRVTDSSRQQQVEFISGSKNG 254
           R  ++    + HCQ +P+T  A  VT   ++  V F+  S  G
Sbjct: 552 RNLEVRHQWDVHCQGNPVTEAARFVTGPDQKNNVTFLQPSSVG 594


>At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1017

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 104 K*KQIRVPFVRHFFCAQLSLSKSPIDNYGCQSDRQLTSATSRIYLRVEK 250
           K ++I    +R  FC + S++ + +D Y C  D Q   A   ++ R+E+
Sbjct: 568 KGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKA---VFDRIER 613


>At2g47630.1 68415.m05942 esterase/lipase/thioesterase family
           protein similar to monoglyceride lipase from [Homo
           sapiens] GI:14594904, [Mus musculus] GI:2632162;
           contains Interpro entry IPR000379
          Length = 351

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 177 LTITAVRVTDSSRQQQVEFISGSKNGNK 260
           LT+T +RV +++  Q+V  ++G  NG++
Sbjct: 300 LTVTPIRVGNTTSVQRVTTVNGVSNGHR 327


>At1g77960.1 68414.m09085 hypothetical protein
          Length = 211

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 129 NGTRICFYLMNFNYTRNAFINYLFSCFSVAFVFVII 22
           N  +  F+L  F  T + F  YLF  +++ F +++I
Sbjct: 176 NAEQRLFFLHFFLLTYHTFFKYLFHIYTLPFFYLLI 211


>At1g29460.1 68414.m03604 auxin-responsive protein, putative similar
           to auxin-induced protein 6B (SP:P33083) [Glycine max]
          Length = 148

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 264 FAKNTFIRIRVYFPLDYDFSQLFEELLSL 350
           F   T  +IR  FPL Y  + +FEELL +
Sbjct: 52  FVVYTVDKIRFAFPLSYLNNSVFEELLKI 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,208,716
Number of Sequences: 28952
Number of extensions: 145585
Number of successful extensions: 324
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)