Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0513
         (839 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.32 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.32 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    24   1.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   1.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   4.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.3  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   9.2  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 73  RRRHAPVQRN*LLRNGMRAAAPTEALSSTAPGGQG 177
           +R+ +PVQ+  +L+N    A P E L+     G G
Sbjct: 82  KRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAG 116


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 73  RRRHAPVQRN*LLRNGMRAAAPTEALSSTAPGGQG 177
           +R+ +PVQ+  +L+N    A P E L+     G G
Sbjct: 82  KRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAG 116


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 573 CVCM*GIIKDLMYVRFNIYYSHDYC 647
           C  + G+IK+ + V F +YY    C
Sbjct: 248 CTTLIGLIKNCVIVIFELYYLSHVC 272


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 304 EFHKQFSFNSRHIQVKRQCQTLFSV-LTSPPGFVWF 200
           E  K+F+F S++I +KR+ +   ++ L+     +WF
Sbjct: 170 ELEKEFTFVSKYITIKRKSELAENLGLSERQIKIWF 205


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 662  SILINTIIMTIVNIESDIH*IFNYTLHTNAHYKD 561
            S   N++   +   ESD+  I  YT+H    + D
Sbjct: 1406 STTTNSLTFKLKPHESDVEPIHGYTIHYKPEFGD 1439


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 458 TSLTANDAHRLDASEGYHEKTQMKVLLIICTL 363
           TSL   +  RLD   G+ +  + ++ L++ T+
Sbjct: 609 TSLNREEIKRLDNGVGFLKVKENEITLLVATV 640


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -1

Query: 515 SIDSTHSHHIIRKIPLELDTSLTANDAHRLDASEGYHEKTQMKVL 381
           ++ S+ S+  + +   + D S  + D H  D     H+K + +VL
Sbjct: 2   NLPSSASNPAVSERDPDEDNSEDSKDPHLTDQQASGHKKRKRRVL 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,369
Number of Sequences: 336
Number of extensions: 3652
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)