Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0511
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 29 0.68
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 28 1.6
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 27 2.7
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 4.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.8
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 26 4.8
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.3
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 25 8.3
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 8.3
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 29.1 bits (62), Expect = 0.68
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 262 LEVVSPHEFEIVIY-LNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITA 423
LE ++ +F ++I L + G+L+ + LP +LKLS + S+W + A
Sbjct: 29 LEALTQEDFPVLIRALKRFGILDGFPNTRLPNEMILKLSSVQGEDASVWEQIPAA 83
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 115 QRXXRQQEGANNKNDT*SVSGSARCTQGGGVAGAEVHILSHRLQRQVDGLEVVS 276
Q+ EGA + + SVSG+ + G AE L+++ GLE++S
Sbjct: 206 QKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLEYVESLKKKASGLEIMS 259
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 175 GSARCTQGGGVAGAEVHILSHRLQRQVDGLEVVSPHEFEIVIYLNQMGVLN 327
GS+R GG +EV L Q+DG E ++++ N++ +L+
Sbjct: 251 GSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATK--NIKVIMATNRIDILD 299
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -2
Query: 578 GYLHYVSFTNS-QLDFGCFRDHFHESLYEHLSQA*ATNVWKRDRILRADRYPEAVMNSTQ 402
GY +Y + ++ R+++ + +Y + A VW R+R+L A + +
Sbjct: 631 GYAYYETKRELLSIEIKVTRENYEKGVY-WIRNLLAKTVWDRERMLSVINQQLADIPFQK 689
Query: 401 RDMERFLPS 375
RD E LPS
Sbjct: 690 RDAEFILPS 698
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 579 PAFKCAGLLRGPPHTGPLPAIPWPHPNI 662
PA A + GPP P P P HPN+
Sbjct: 96 PANGYAAVYGGPPSQLPPPPQPQSHPNV 123
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 604 NRPAHLNAGVICTMYLSRIRNLTSVVSAIIFTNLYTSTCHRPELP 470
++ + L++ C + S IR L S V+A +N+ TS+ HR +LP
Sbjct: 122 SKSSTLHSNPYCPEHHS-IRTLPSAVTATT-SNISTSSSHRSDLP 164
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -2
Query: 512 HESLYEHLSQA*ATNVWKRDRILRADRYPEAVMNSTQRDMERFLPSLSFKTAQPGSEPSS 333
H S + + +A A N +R L YP+ +++ +R L SL PG+
Sbjct: 348 HSSAEKEMQKAPAKNKRRRTGSLETGLYPKESPTPSKKRSKRVLWSLK-HIVSPGNREKH 406
Query: 332 TKFSTP 315
+ STP
Sbjct: 407 SLNSTP 412
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 694 KSKLSVLTSAIILGCGQGIAGRGPVCGGPRNRPAHLNA 581
K L V+ I+ G I G G V PR P+HLNA
Sbjct: 665 KPLLHVIRKNIVKGMAH-ITGGGLVENVPRMLPSHLNA 701
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 568 TMYLSRIRNLTSVVSAIIFTNLYTSTCHRPELPTFGSATVSCAPI 434
T + S N+TS +SA F+N + + + P FGS+ PI
Sbjct: 377 TTFESPFANVTSKISASGFSNDNPANKNIIQTPMFGSSNTIDGPI 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,842
Number of Sequences: 5004
Number of extensions: 47752
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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