Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0511
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                     120   2e-27
SB_55884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)                   29   3.8  
SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)                    29   5.1  

>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score =  120 bits (288), Expect = 2e-27
 Identities = 56/75 (74%), Positives = 63/75 (84%)
 Frame = +1

Query: 259  GLEVVSPHEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLS 438
            GL VVSP  FE+ +YLNQMGV NF+DDG   GCA+LKLSD RKRSMSLW EFITASGYLS
Sbjct: 1340 GLYVVSPKRFEVCLYLNQMGVFNFIDDGCPSGCAMLKLSDERKRSMSLWTEFITASGYLS 1399

Query: 439  ARKIRSRFQTLVAQA 483
            ARK+RSRF +LV +A
Sbjct: 1400 ARKMRSRFTSLVGEA 1414



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%)
 Frame = +2

Query: 101  MNKFYNEXXANRKAQITKTIHEVCXXVQDVLKEVELQEPRFISSLTDYNGR 253
            M  F +     RK++  + I  VC  V +VLK VE  EPRFISSL   +GR
Sbjct: 1287 MKHFVSNIVHRRKSETYQAIANVCRVVPEVLKHVEALEPRFISSLKQLDGR 1337



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 510  VKMI-AETTEVKLRIRERYIVQITPAFKCAGLLRGPPHTGPLPAIPWPHPNIIAEVKTES 686
            V+M+ A +    L I + Y V++ PAF+C  +      + P P   WP    +A +K   
Sbjct: 1424 VQMVGANSHSTVLSINDTYTVELIPAFRCGAIWPQNTCSWPSPDSYWPSQAAVANIKLRG 1483

Query: 687  FDLLSK 704
            F+LL+K
Sbjct: 1484 FNLLAK 1489


>SB_55884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 189 YSRRWSCRSRGSYPLSPTTTAGRRPRSGLAP 281
           ++R  +CR  G  PL   T   R PR+G AP
Sbjct: 193 HTRLTTCRPGGKAPLRKCTRRARLPRTGAAP 223


>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
          Length = 1106

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 192 SRRWSCRSRGSYPLSPTTTAGRRPRSGLAP-RVRDRH 299
           +R  +CR  G  PL   T   R PR+G AP   R RH
Sbjct: 221 TRLTTCRPGGRAPLRKCTRRARLPRTGAAPLPFRRRH 257


>SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1650

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 192 SRRWSCRSRGSYPLSPTTTAGRRPRSGLAP 281
           +R  +CR  G  PL   T   R PR+G AP
Sbjct: 242 TRLTTCRPGGKAPLRKCTRRARLPRTGAAP 271


>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
          Length = 142

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +2

Query: 566 SANNPGVQVRRPVARSAAHW-----APPGDTLAASQYNR 667
           +A + G  +R  V+R   HW     AP G TLA +Q NR
Sbjct: 32  AATDGGAPIRPIVSRITIHWPAFYNAPTGKTLAYTQLNR 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,355,339
Number of Sequences: 59808
Number of extensions: 387575
Number of successful extensions: 1083
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)