Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0511
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical pr...   134   6e-32
U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein ...   134   6e-32
U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical p...    28   7.8  
AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical...    28   7.8  
AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical...    28   7.8  
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical...    28   7.8  
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam...    28   7.8  
AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    28   7.8  

>Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical
           protein F35G12.6 protein.
          Length = 364

 Score =  134 bits (324), Expect = 6e-32
 Identities = 64/96 (66%), Positives = 74/96 (77%)
 Frame = +1

Query: 220 VHILSHRLQRQVDGLEVVSPHEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMS 399
           ++ LS     + DG+ V SP E+E V+YLNQMGV NFVDDG++ GCAVLKLSDGRKRSMS
Sbjct: 53  INTLSETTTGRFDGIVVHSPSEYEAVLYLNQMGVFNFVDDGTIQGCAVLKLSDGRKRSMS 112

Query: 400 LWVEFITASGYLSARKIRSRFQTLVAQACDKCSYRD 507
           LWVEFITASGYLSARKIR RFQ +VAQ      + D
Sbjct: 113 LWVEFITASGYLSARKIRHRFQNIVAQVLQTPQFSD 148



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/51 (49%), Positives = 40/51 (78%)
 Frame = +2

Query: 89  LVYQMNKFYNEXXANRKAQITKTIHEVCXXVQDVLKEVELQEPRFISSLTD 241
           +VYQ+N ++NE   +RK ++TKT+  +   VQ++LKEVE QEPRFI++L++
Sbjct: 8   VVYQVNNYFNEKVQHRKVRVTKTVQRIAKVVQEILKEVEAQEPRFINTLSE 58



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 23/66 (34%), Positives = 41/66 (62%)
 Frame = +3

Query: 507 FVKMIAETTEVKLRIRERYIVQITPAFKCAGLLRGPPHTGPLPAIPWPHPNIIAEVKTES 686
           + K++ + T+V++R+ ++Y VQIT AF+C G+        P+  +PWP+  +  + K E 
Sbjct: 149 YCKLLQDNTDVRVRVDDKYTVQITCAFRCNGIWPRSASHWPIAGLPWPNAALANQTKAEG 208

Query: 687 FDLLSK 704
           FDL S+
Sbjct: 209 FDLTSR 214


>U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein
           protein.
          Length = 364

 Score =  134 bits (324), Expect = 6e-32
 Identities = 64/96 (66%), Positives = 74/96 (77%)
 Frame = +1

Query: 220 VHILSHRLQRQVDGLEVVSPHEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMS 399
           ++ LS     + DG+ V SP E+E V+YLNQMGV NFVDDG++ GCAVLKLSDGRKRSMS
Sbjct: 53  INTLSETTTGRFDGIVVHSPSEYEAVLYLNQMGVFNFVDDGTIQGCAVLKLSDGRKRSMS 112

Query: 400 LWVEFITASGYLSARKIRSRFQTLVAQACDKCSYRD 507
           LWVEFITASGYLSARKIR RFQ +VAQ      + D
Sbjct: 113 LWVEFITASGYLSARKIRHRFQNIVAQVLQTPQFSD 148



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/51 (49%), Positives = 40/51 (78%)
 Frame = +2

Query: 89  LVYQMNKFYNEXXANRKAQITKTIHEVCXXVQDVLKEVELQEPRFISSLTD 241
           +VYQ+N ++NE   +RK ++TKT+  +   VQ++LKEVE QEPRFI++L++
Sbjct: 8   VVYQVNNYFNEKVQHRKVRVTKTVQRIAKVVQEILKEVEAQEPRFINTLSE 58



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 23/66 (34%), Positives = 41/66 (62%)
 Frame = +3

Query: 507 FVKMIAETTEVKLRIRERYIVQITPAFKCAGLLRGPPHTGPLPAIPWPHPNIIAEVKTES 686
           + K++ + T+V++R+ ++Y VQIT AF+C G+        P+  +PWP+  +  + K E 
Sbjct: 149 YCKLLQDNTDVRVRVDDKYTVQITCAFRCNGIWPRSASHWPIAGLPWPNAALANQTKAEG 208

Query: 687 FDLLSK 704
           FDL S+
Sbjct: 209 FDLTSR 214


>U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical
           protein R12B2.8 protein.
          Length = 80

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 535 SVVSAIIFTNLYTSTCHRPELPTFGSATVSC 443
           S V++I+    Y  TC  PEL TF S    C
Sbjct: 15  SAVASIVTETCYPDTCADPELDTFFSFGTCC 45


>Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical
           protein F11A5.15 protein.
          Length = 191

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 607 RNRPAHLNAGVICTMYLSRIRNLTSVVSAIIFTN 506
           +NR +     ++C ++L R+  L +V++ II+T+
Sbjct: 95  KNRASSSTRSILCLVWLVRVMLLVAVITGIIWTS 128


>AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15c protein.
          Length = 903

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 634 GRGPVCGGPRNRPAHLNAGVICTMYLSRI-RNLTSVVSAI 518
           GR   CG P +  A +N G+I  +  S I RNL S +S +
Sbjct: 631 GRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKV 670


>AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15b protein.
          Length = 951

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 634 GRGPVCGGPRNRPAHLNAGVICTMYLSRI-RNLTSVVSAI 518
           GR   CG P +  A +N G+I  +  S I RNL S +S +
Sbjct: 679 GRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKV 718


>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15a protein.
          Length = 1107

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 634 GRGPVCGGPRNRPAHLNAGVICTMYLSRI-RNLTSVVSAI 518
           GR   CG P +  A +N G+I  +  S I RNL S +S +
Sbjct: 835 GRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKV 874


>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
           1B protein.
          Length = 1107

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 634 GRGPVCGGPRNRPAHLNAGVICTMYLSRI-RNLTSVVSAI 518
           GR   CG P +  A +N G+I  +  S I RNL S +S +
Sbjct: 835 GRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKV 874


>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 634 GRGPVCGGPRNRPAHLNAGVICTMYLSRI-RNLTSVVSAI 518
           GR   CG P +  A +N G+I  +  S I RNL S +S +
Sbjct: 680 GRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKV 719


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,777,081
Number of Sequences: 27780
Number of extensions: 287084
Number of successful extensions: 902
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)