Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0511
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    24   1.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.8  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.0  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +3

Query: 555 ERYIVQITPAFKCAGLLRGPPHTGPLPAIPWPHPNIIAEVKTESFDLLSKXC 710
           +R  +Q+       GL+    HT     +P+  PN+I     +   LLS  C
Sbjct: 17  QRLCIQLVVGPYVIGLMNTMTHTTNAFCLPFCGPNVINPFFCDMSPLLSLVC 68


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 667 AIILGCGQGIAGRGP--VCGGPRNRPAHLNAGVICT 566
           A+   CG     +GP  +CGGP+N       G+ C+
Sbjct: 51  AMSSACGIVQCAKGPDELCGGPQNYLGICAEGMQCS 86



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 412 FITASGYLSARKIRSRFQTLVAQACDKCSY 501
           F   SGY S R+  + +      +C KC Y
Sbjct: 19  FDKCSGYPSIRQGTTSYCLGCGDSCHKCKY 48


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -3

Query: 649  GQGIAGR-GPVCGGPRNRPAHLNAG 578
            G G +G  GP  G P N  AH  +G
Sbjct: 1752 GNGHSGTMGPPVGHPTNASAHSRSG 1776


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 219 GSYPLSPTTTAG--RRPRSGLAPRVRDRHL 302
           G+Y L PTTTA     P +  +  +  +H+
Sbjct: 374 GNYSLVPTTTASPTTEPSTTTSTTISQKHI 403


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = +3

Query: 555 ERYIVQITPAFKCAGLLRGPPHTGPLPAIPWPHPNIIAEVKTESFDLLSKXC 710
           +R  +Q+       GL+    HT     +P+  PN+I     +    LS  C
Sbjct: 18  QRLCIQLVVGPYVIGLMNTMTHTTNAFCLPFCGPNVINPFFCDMSPSLSLLC 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,566
Number of Sequences: 438
Number of extensions: 3865
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)