Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0511
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58100.1 68416.m06479 glycosyl hydrolase family protein 17 si...    30   1.8  
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ...    30   1.8  
At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containi...    29   2.4  
At3g04810.2 68416.m00521 protein kinase, putative similar to LST...    28   5.5  
At3g04810.1 68416.m00520 protein kinase, putative similar to LST...    28   5.5  
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta...    28   7.2  
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)     28   7.2  

>At3g58100.1 68416.m06479 glycosyl hydrolase family protein 17
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]; C-terminal
           homology only
          Length = 180

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 697 NKSKLSVLTSAIILGCGQGIAGRGPV-CGGPRNRP 596
           N ++ S L +AI   CGQG A  GP+  GGP N P
Sbjct: 46  NNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDP 80


>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
           Pfam profilePF03107: DC1 domain
          Length = 569

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 366 QDGAARERAVVHEVQHSHLIEIDDDLELVGRDH 268
           Q+     + +VH++ H+H++   D  EL G++H
Sbjct: 375 QEDYETNKVMVHDINHNHVVTSIDMCELEGKEH 407


>At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 581

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -3

Query: 562 YLSR-IRNLTSVVSAIIFTN-LYTSTCHRPELPTFGSATVSCAPI-GIPK 422
           YL R   N +S +++I+F N +  S+  RP+L TF  A  SC  I  IPK
Sbjct: 76  YLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPK 125


>At3g04810.2 68416.m00521 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 578

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = -2

Query: 665 DYIGMRPGYRREGPSVRRTAQQAGALERRGYLHYVSFT---NSQLDFGCFRDHFHESLYE 495
           D   + PG  REG  ++   ++   LE R      + T   +S+   G  R  F  S Y+
Sbjct: 459 DKFTLEPGQNREGAIMKAVYEEDAYLEDRSESSDQNATAGASSRASSGVRRQRFDPSSYQ 518

Query: 494 HLSQA*ATNVWKRDRILRADRYPE 423
             ++A    +    R+L+ +RY E
Sbjct: 519 QRAEALEGLLEFSARLLQDERYDE 542


>At3g04810.1 68416.m00520 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 606

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = -2

Query: 665 DYIGMRPGYRREGPSVRRTAQQAGALERRGYLHYVSFT---NSQLDFGCFRDHFHESLYE 495
           D   + PG  REG  ++   ++   LE R      + T   +S+   G  R  F  S Y+
Sbjct: 487 DKFTLEPGQNREGAIMKAVYEEDAYLEDRSESSDQNATAGASSRASSGVRRQRFDPSSYQ 546

Query: 494 HLSQA*ATNVWKRDRILRADRYPE 423
             ++A    +    R+L+ +RY E
Sbjct: 547 QRAEALEGLLEFSARLLQDERYDE 570


>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
           putative almost identical to 26S proteasome AAA-ATPase
           subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
           almost identical to a member of conserved Sug1 CAD
           family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
          Length = 419

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 175 GSARCTQGGGVAGAEVHILSHRLQRQVDGLEVVSPHEFEIVIYLNQMGVLN 327
           GSAR   G G   +EV      L  Q+DG E  + ++ ++++  N++ +L+
Sbjct: 267 GSARMESGSGNGDSEVQRTMLELLNQLDGFE--ASNKIKVLMATNRIDILD 315


>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
          Length = 419

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 175 GSARCTQGGGVAGAEVHILSHRLQRQVDGLEVVSPHEFEIVIYLNQMGVLN 327
           GSAR   G G   +EV      L  Q+DG E  + ++ ++++  N++ +L+
Sbjct: 267 GSARMESGSGNGDSEVQRTMLELLNQLDGFE--ASNKIKVLMATNRIDILD 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,001,752
Number of Sequences: 28952
Number of extensions: 267034
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)