Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0510
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    30   0.36 
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    29   1.1  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    28   1.9  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.4  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   5.9  
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    26   7.8  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 545 FSWPKYRDFLRVSYAKLTPTLNRKL 619
           F   K+ +FL+++++ LTPTL++KL
Sbjct: 406 FVLEKFHEFLKINFSYLTPTLSQKL 430


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
 Frame = -2

Query: 573 RKSRYLGQENTGAKVRXQHDNGAWRYLLKSVYSFNGLNKVRGKYVITRRPSF----NIKP 406
           R+SR LG+ +   +      NG+W+  L S      L++V G++     P+F      K 
Sbjct: 56  RRSRRLGRLSISVR-----PNGSWQVYLLSSLPLRSLSRVWGQFNRAHLPTFLRTPGFKL 110

Query: 405 WAWYKSYDLFQALKKFVTSTDCYSDGFLYDIVDVTR 298
           +AW    +L +     +T    + D F  ++   TR
Sbjct: 111 YAWVFGCNLSELKDPDLTHYRNFQDFFCRELRPETR 146


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 187 DIESILRTNTFFGAADWIAKAENFARTPIESYSYSLNAR 71
           DIE +++    F   D I K    AR  +E+Y+YSL  +
Sbjct: 542 DIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQ 580


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 108 VLAKFSALAIQSAAPKNVFVRNIDSISIMASRNCCIASLNN 230
           VLA     +I++  P ++ +  + S S+  S   CI+SL N
Sbjct: 263 VLASDCFSSIENCIPPDLIIDKVFSSSLQLSEEACISSLLN 303


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 690 HNT--LLIDSVSWLPNIPKSFRXK 755
           HNT  LL+DS+SW+P   K  + K
Sbjct: 60  HNTHFLLLDSISWIPCTCKILKLK 83


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 221 FEQQSVGIACARIFTYSCSALYCNACLVTSTISYRN 328
           FEQ+    A A  FTY    + C+A L   TI  R+
Sbjct: 307 FEQKDA--AMAGFFTYQAHPIACSAALAVQTILRRD 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,480,795
Number of Sequences: 5004
Number of extensions: 74494
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)