Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0510
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058... 47 2e-05
11_01_0098 - 724413-724449,725200-725690 32 0.50
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 31 1.2
02_01_0088 - 627825-628984,629339-629509,629612-630416 30 2.0
01_01_0378 - 2953514-2954341,2954388-2954504 29 4.7
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610... 29 6.2
10_02_0150 - 5883942-5884328,5884573-5884677,5885219-5885311,588... 29 6.2
04_04_0564 - 26261199-26261508,26261605-26261697,26262150-262622... 29 6.2
02_05_0683 + 30877731-30878243 29 6.2
12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831 28 8.2
01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997 28 8.2
>04_04_1393 -
33204699-33204806,33204927-33205164,33205581-33205825,
33206229-33206339,33206645-33206743,33207684-33207731,
33207882-33207999,33208085-33208115,33208700-33208806,
33209644-33209725,33210010-33210104,33210579-33210664,
33211074-33211195,33211613-33211824,33212362-33212510,
33212755-33212982
Length = 692
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = -3
Query: 662 IXVGFTPEGINQNYVVYDLMLESAWRKKPVENLDTWARRIPERRYG 525
+ VG + EGI QN +VYDLM E A+ + V+ L W P RRYG
Sbjct: 427 VGVGMSMEGIEQNPIVYDLMSEMAFHHRQVD-LQVWVETYPTRRYG 471
Score = 45.2 bits (102), Expect = 7e-05
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -1
Query: 253 SARYSNTLLFKEAIQQFLDAMIDIESILRTNTFFGAADWIAKAENFARTPIESYSYSLNA 74
S + +N Q F+D + D++++L ++ F W+ A+ AR + Y NA
Sbjct: 603 SYKSNNVNQVSNLCQHFIDLVNDLDTLLASHEGFLLGPWLESAKGLARDKEQEMQYEWNA 662
Query: 73 RNQITLWGPN 44
R QIT+W N
Sbjct: 663 RTQITMWFDN 672
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -2
Query: 408 PWAWYKSYDLFQALKKFVTSTDCYSDG--FLYDIVDVTRQALQYRAEQLYVNM 256
P WY + + +AL+ F+ D SD F YD+VD+TRQ L A Q++V +
Sbjct: 548 PHLWYDTDAVIRALELFLRYGDEVSDSNTFRYDLVDLTRQTLAKYANQVFVKI 600
>11_01_0098 - 724413-724449,725200-725690
Length = 175
Score = 32.3 bits (70), Expect = 0.50
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = -1
Query: 583 RNP*KISILGPGEYRSEGTVATRQRRXAVSVKKRIQLQWLEQSPREVR 440
RNP ++ +L PG G+ R+RR AV V +R + QW Q REVR
Sbjct: 66 RNPPQLRLLQPGR----GSCRHRRRRVAV-VGERPRAQWSAQRMREVR 108
>06_03_1318 -
29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 111 LAKFSALAIQSAAPKNVFVRNIDSISIMASRNCCIASLNNKVLE*RALAY 260
L+ F L +Q+ A NV +R + ++ + CC + + LE L+Y
Sbjct: 848 LSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSY 897
>02_01_0088 - 627825-628984,629339-629509,629612-630416
Length = 711
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 142 DWIAKAENFARTPIESYSYSLNARNQITLWGPNGEITDYACKPRAGF 2
DW+A E+ A+ P SY+ + N + PN T Y C GF
Sbjct: 213 DWVAGRESCAQAPKNRTSYACVSTNSSCINSPNA--TGYLCACNNGF 257
>01_01_0378 - 2953514-2954341,2954388-2954504
Length = 314
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 151 GAADWIAKAENFARTPIESYSYSLNARNQITLWGPNGEI 35
GA W+A++ +FART I S N + +T +G++
Sbjct: 145 GADPWLAESADFARTFISGLSAGANLAHHVTARVASGQL 183
>10_07_0168 +
13758189-13758418,13758888-13759041,13760576-13761042,
13761361-13761478,13761566-13761622,13761906-13762082,
13762225-13762365,13762458-13762531,13764583-13764738,
13764822-13764895,13764992-13765068
Length = 574
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 284 TGRNNYT*ICERTLFQHFV 228
TG NY IC R FQHF+
Sbjct: 108 TGHRNYPRICTRESFQHFI 126
>10_02_0150 -
5883942-5884328,5884573-5884677,5885219-5885311,
5885394-5885606,5886976-5887005
Length = 275
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 132 AIQSAAPKNVFVRNIDSISIMASRNCCIASLNNKVLE 242
A+ PK+ F+RN+ S +N A++N++V E
Sbjct: 170 AVAHVLPKSTFLRNVGMQSTEMKKNAKAAAMNDRVCE 206
>04_04_0564 -
26261199-26261508,26261605-26261697,26262150-26262295,
26262400-26262720,26263184-26263272,26263466-26263654,
26265546-26265804
Length = 468
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 220 EAIQQFLDAMIDIESILRTNTFFGAADWIAKAENFARTPIESYSYSLN 77
EAI ++ D+ + IL+ G W+ + R P+ S YSLN
Sbjct: 336 EAISKWNDSPSTVLPILKKLMGAGLRIWVYSGDTDGRVPVTSTRYSLN 383
>02_05_0683 + 30877731-30878243
Length = 170
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 587 RKKPVENLDTWARRIPERRYGXNTTTAXGGIC 492
R + V + W RR +RR G + TA GG C
Sbjct: 78 RNEAVATVRRWQRRRRQRRAGDDACTAAGGGC 109
>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
Length = 512
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 230 QSVGIACARIFTYSCSALYCNACLVTSTISYRNP 331
Q + + CA F YSC Y L T+ + R P
Sbjct: 209 QMIKVGCAHTFCYSCLTSYTQEKLQTNKVPIRCP 242
>01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997
Length = 387
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 582 ETRRKSRYLGQENTGAKVRXQHDNGAWR 499
E R ++ Y+G N G + + H N +WR
Sbjct: 102 EIREEAMYMGNNNNGYRSQGVHANESWR 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,886,288
Number of Sequences: 37544
Number of extensions: 445655
Number of successful extensions: 1000
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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