Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0510
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17997| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   8e-12
SB_6749| Best HMM Match : RVT_1 (HMM E-Value=0.069)                    32   0.68 
SB_37877| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_58575| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           29   4.8  
SB_21396| Best HMM Match : CHGN (HMM E-Value=3e-16)                    29   6.3  

>SB_17997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 36/88 (40%), Positives = 47/88 (53%)
 Frame = -1

Query: 268 IRKYASARYSNTLLFKEAIQQFLDAMIDIESILRTNTFFGAADWIAKAENFARTPIESYS 89
           I  Y +    N + F   + +  D   D++S+L+TN  F    W+  A+    TP E   
Sbjct: 536 ISAYKNRSALNVIHFGSRLLEMFD---DLDSLLQTNRNFLLGRWLNSAKALGTTPAEVAL 592

Query: 88  YSLNARNQITLWGPNGEITDYACKPRAG 5
           Y  NARNQITLWGP GEI DYA K  +G
Sbjct: 593 YEFNARNQITLWGPRGEIEDYANKMWSG 620



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = -2

Query: 507 AWRYLLKSVYSFNGLNKVRGKYVITRRPSFNIKPWAWYKSYDLFQALKKF--VTSTDCYS 334
           AWR L++SVY  NG        +   +PS + KP  WY   D+F A  +     +   + 
Sbjct: 450 AWRLLIRSVYQCNGYCADHIHSIFVWKPSLDNKPNLWYDPEDVFNAWDELRSTAAEFMHV 509

Query: 333 DGFLYDIVDVTRQALQYRAEQLY 265
           + F YD+VDVTRQAL  R   +Y
Sbjct: 510 ETFRYDLVDVTRQALHLRVIPIY 532



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = -3

Query: 671 STMIXVGFTPEGINQNYVVYDLMLESAWRKKPVE--NLDTWARRIPERRYG 525
           STMI  G T EGI QN ++++LM E  +R +P+   +LD W +    RRYG
Sbjct: 246 STMIGTGLTMEGIEQNDMMFELMNEMGYRLEPLNPVDLDNWIKDYALRRYG 296



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = -3

Query: 671 STMIXVGFTPEGINQNYVVYDLMLESAWRKKPVE--NLDTWARRIPERRYG 525
           STMI  G T EGI QN ++++LM E  +R +P+   +LD W +    RRYG
Sbjct: 391 STMIGTGLTMEGIEQNDMMFELMNEMGYRLEPLNPVDLDNWIKDYALRRYG 441



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 507 AWRYLLKSVYSFNGLNKVRGKYVITRRPSFNIKPWAWYKSYDLFQA 370
           AWR L++SVY  NG        +   +PS + KP  WY   D+F A
Sbjct: 305 AWRLLIRSVYQCNGYCADHIHSIFVWKPSLDNKPNLWYDPEDVFNA 350


>SB_6749| Best HMM Match : RVT_1 (HMM E-Value=0.069)
          Length = 387

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 130 KAENFARTPIESYSYSLNARNQITLWGPNGEITDYACK 17
           KA+  A T +E YS  L   N I L GPN   T+  CK
Sbjct: 54  KAQLLADTNVELYSTDLPPENAIELVGPNYSTTNCDCK 91


>SB_37877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 146 CTEKRICPQYRFYINHGIQKLLYRFFEQQSVGIACARIFTYSCSALYCNACLVTSTI 316
           C E  + P+ RF       +LL  F   QS+    AR F  S S  Y NA ++ S +
Sbjct: 65  CKEMELPPETRFLAIELFDRLLLIFLPPQSITPNKARRFLNSISCRYSNASILKSEL 121


>SB_58575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 174 IDSISIMASRNCCIASLNNKVLE*RALAYLRIVV 275
           I+ + ++AS  CC+  LN+K++  RA    RI V
Sbjct: 1   IERLKLLASEACCLFELNDKLIYDRAQELKRIAV 34


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 197 IQKLLYRFFEQQSVGIACARIFTYSCSALYCNACLVTSTI 316
           ++  L RF+  +S G  C R+  Y CSA   N+C+  S I
Sbjct: 131 VRARLVRFWPWRSEGNPCMRVEVYGCSA---NSCVKNSLI 167


>SB_21396| Best HMM Match : CHGN (HMM E-Value=3e-16)
          Length = 519

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 173 YRFYINHGIQKLLYRFFEQQSVG-IACARIFTYSCSALYCNACLVTSTISYRNPSE*QSV 349
           YRF INHG++  +Y F + +S G +  AR+F            +V  ++ Y+ P+E  ++
Sbjct: 237 YRFDINHGVEYEIY-FNDSKSKGSVLSARVF-----RKLSKPQIVLPSLKYKQPNELINL 290

Query: 350 LV 355
           +V
Sbjct: 291 IV 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,814,950
Number of Sequences: 59808
Number of extensions: 552308
Number of successful extensions: 1231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)