Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0510
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83234-2|CAB70170.2| 715|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF063007-1|AAC16430.2| 730|Caenorhabditis elegans Hypothetical ... 31 1.0
AF117337-1|AAD22029.1| 277|Caenorhabditis elegans Hus1-like pro... 30 2.4
AF106587-2|AAC78225.1| 277|Caenorhabditis elegans Human hus1 re... 30 2.4
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 29 5.5
U29244-18|AAC71099.2| 515|Caenorhabditis elegans Hypothetical p... 29 5.5
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 29 5.5
AF016653-2|AAC48225.2| 914|Caenorhabditis elegans Patched relat... 29 5.5
U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical pr... 28 9.6
>Z83234-2|CAB70170.2| 715|Caenorhabditis elegans Hypothetical
protein K09E4.4 protein.
Length = 715
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 671 STMIXVGFTPEGINQNYVVYDLMLESAWRKKPVENLDTWARRIPERRYGXNTTTA 507
S ++ G + E I+QNYVVY M++ W +P+ L+ W + E RY + A
Sbjct: 445 SNLVGAGLSMEAIDQNYVVYQFMIDRMWSPEPLP-LNNWLKAYSESRYSADFKVA 498
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 139 WIAKAENFARTPIESYSYSLNARNQITLWGPNGEITDYACKPRAG 5
WI A++ A T E + + A + +T+WGP G+ DYA + AG
Sbjct: 626 WIENAKSIAPTSEERQVFPVTAGDILTVWGPTGQNLDYAHREWAG 670
>AF063007-1|AAC16430.2| 730|Caenorhabditis elegans Hypothetical
protein R119.1 protein.
Length = 730
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -1
Query: 274 TTIRKYASARYSNTLLFKEAIQQFLDAMIDIESILRTNTFFGAADWIAKAENFARTPIES 95
TTI K S + L + F A+ D+E I TNT G ++W+ K + R+ S
Sbjct: 282 TTIMKNESKSVRDFLSVGR-LNNFEAALSDLEMIRDTNTTLGLSNWVRKVRDVIRSIQSS 340
Query: 94 YSYS 83
++S
Sbjct: 341 DTHS 344
>AF117337-1|AAD22029.1| 277|Caenorhabditis elegans Hus1-like
protein protein.
Length = 277
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 117 KFSALAIQSAAPKNVFVRNIDSISIMASRNCCI 215
KFS+L +Q A +VF++ + S+S ++ + CC+
Sbjct: 2 KFSSL-LQDTAAIDVFIKILTSVSKLSKKRCCV 33
>AF106587-2|AAC78225.1| 277|Caenorhabditis elegans Human hus1
related protein 1 protein.
Length = 277
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 117 KFSALAIQSAAPKNVFVRNIDSISIMASRNCCI 215
KFS+L +Q A +VF++ + S+S ++ + CC+
Sbjct: 2 KFSSL-LQDTAAIDVFIKILTSVSKLSKKRCCV 33
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 124 ENFARTPIESYSYSLNARNQITLWGPNGE 38
+NF+ + IE + YS NA + +W P E
Sbjct: 353 QNFSASEIELHHYSRNAEPSVVVWPPVSE 381
>U29244-18|AAC71099.2| 515|Caenorhabditis elegans Hypothetical
protein ZK1248.1 protein.
Length = 515
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 157 FFGAADWIAKAENFARTPIESYSYSLNARNQITLWGPNGEITD-YACKP 14
F+GAA + + +R P ++ ++S N + +L + +D + CKP
Sbjct: 436 FYGAAVFFCNQDGMSRVPFQNLAHSNNYQRVNSLMSQMKQFSDAFKCKP 484
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -1
Query: 211 QQFLDAMIDIESILRTNTFFGA 146
++F++ +ID+ESIL+T FF +
Sbjct: 255 ERFIELLIDLESILQTRRFFNS 276
>AF016653-2|AAC48225.2| 914|Caenorhabditis elegans Patched related
family protein 3 protein.
Length = 914
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 20 ACIICYFP-VRXPQSYLIASIQTI*IRFYWCSREILSFSDPIGCTEKRICPQYR-FYINH 193
+ +ICY P + ++ + ++ I F +I F+ P G + +YR F+ NH
Sbjct: 28 SAVICYCPWTCIILTIMLTLVLSLKIPFTRMQNDISDFT-PFGARSRVELEKYRKFFNNH 86
Query: 194 GIQKLLYRF 220
G K +Y F
Sbjct: 87 GEPKAIYAF 95
>U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical
protein R02F2.8 protein.
Length = 494
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 470 LKLYTLFNRYRXAPLSCCXRTFAPVFSWPKYRDFLRVSYAKLT-PTLNRKLHNSDLFL 640
L L ++F+ Y L C WP+YRD R Y ++ T+ RK+ + F+
Sbjct: 61 LSLCSIFSLY--TALELCWTWKIMQNRWPEYRDHCRKPYGEMAYRTIGRKMRSFIAFM 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,054,155
Number of Sequences: 27780
Number of extensions: 405781
Number of successful extensions: 975
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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