Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0510
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family / ...    45   7e-05
At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein co...    31   1.3  
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon...    29   5.2  
At3g11020.1 68416.m01330 DRE-binding protein (DREB2B) identical ...    28   6.8  
At4g21460.1 68417.m03104 expressed protein                             28   9.0  

>At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family /
           NAGLU family contains Pfam profile: PF05089
           alpha-N-acetylglucosaminidase (NAGLU)
          Length = 806

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 24/53 (45%), Positives = 31/53 (58%)
 Frame = -3

Query: 686 RPSXISTMIXVGFTPEGINQNYVVYDLMLESAWRKKPVENLDTWARRIPERRY 528
           R S  STM+ VG   EGI QN VVY+L  E A+R + V+ +  W +    RRY
Sbjct: 461 RVSKNSTMVGVGMCMEGIEQNPVVYELTSEMAFRDEKVD-VQKWLKSYARRRY 512



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -2

Query: 411 KPWAWYKSYDLFQALKKFVTSTDCYSDG--FLYDIVDVTRQALQYRAEQLY 265
           K   WY + ++ QALK F+ + D  S    + YD+VD+TRQ L   A Q+Y
Sbjct: 591 KAHLWYSTKEVIQALKLFLEAGDDLSRSLTYRYDMVDLTRQVLSKLANQVY 641



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = -1

Query: 211 QQFLDAMIDIESILRTNTFFGAADWIAKAENFARTPIESYSYSLNARNQITLWGPNGEI 35
           ++FL+ + D++ +L ++       W+  A+  A+   E   Y  NAR Q+T+W  + ++
Sbjct: 661 EKFLELIKDMDVLLASDDNCLLGTWLESAKKLAKNGDERKQYEWNARTQVTMWYDSNDV 719


>At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein
           contains Pfam profile PF01011: PQQ enzyme repeat
          Length = 978

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 552 QENTGAKVRXQHDNGAWRYLLKSVYSFNGLNKVRGKYVIT 433
           +EN  A +  +H    WR++L +  + +G+    GKYVIT
Sbjct: 60  EENVVASLDLRHGEIFWRHVLGTKDAIDGVGIALGKYVIT 99


>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase nearly identical to
           acyl-CoA synthetase (MF7P) from Brassica napus
           [gi:1617270]
          Length = 666

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 578 PVENLDTWARRIPERRYGXNTTTAXGGIC*KAYTASMA*TKSEGST 441
           PV N+D     +PE  Y    +TA G IC +  T      K E  T
Sbjct: 444 PVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKREDLT 489


>At3g11020.1 68416.m01330 DRE-binding protein (DREB2B) identical to
           DREB2B GI:3738232 from [Arabidopsis thaliana]; supported
           by cDNA:gi_3738231_dbj_AB007791.1_AB007791
          Length = 330

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 669 ANXGGPWHNTLLIDSVSWLPN 731
           A+ G PW N ++ D  SW PN
Sbjct: 256 ADYGWPWSNDIVNDQTSWDPN 276


>At4g21460.1 68417.m03104 expressed protein
          Length = 415

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 305 LQGKRYSTGRNNYT*ICERTLFQHFVVQRSD 213
           L GKRY +G++  T  CER  F+H    R D
Sbjct: 331 LVGKRYHSGKDELTITCER--FEHREENRKD 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,845,011
Number of Sequences: 28952
Number of extensions: 371064
Number of successful extensions: 892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)