Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0499
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    26   7.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.3  

>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +3

Query: 114 VNLDMKMKELCIMKLLDHILQPXMFEDIKEIAKEYNIXKS 233
           VNL  K  ++   ++++H+L+    ++I+   K+Y+  +S
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYDQIES 51


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 528  VRDRSRKSGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSP 400
            V DRS    +     + S E   + SV++H  V   + P RSP
Sbjct: 1750 VSDRSFSIVESTVPTIASGEGDDNHSVEDHLKVPTDNEPRRSP 1792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,717
Number of Sequences: 5004
Number of extensions: 41693
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)